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Record W2736010401 · doi:10.1002/9781119413073.ch9

Nonspecific Binding in LC–MS Bioanalysis

2017· other· en· W2736010401 on OpenAlexaff
Aimin Tan, John C. Fanaras

Bibliographic record

Venuenot available
Typeother
Languageen
FieldImmunology and Microbiology
TopicBiosimilars and Bioanalytical Methods
Canadian institutionsNucro Technics
Fundersnot available
KeywordsBioanalysisMolecular biomarkersBiomarkerChemistryNanotechnologyComputational biologyChromatographyBiologyMaterials scienceBiochemistryMedicineInternal medicine

Abstract

fetched live from OpenAlex

Nonspecific binding (NSB) is an undesirable yet very common phenomenon in LC-MS bioanalysis. This chapter explores how people would even know NSB exists; ways to evaluate its severity; why is NSB particularly problematic for biomarker quantitation; and how it can be differentiated from a seemingly similar stability issue. The questions are addressed using representative application examples from the LC-MS bioanalysis of both small and large molecules. To confirm NSB or evaluate the severity, many different approaches can be taken, such as multiple sequential transfers, the deliberate preparation of small and large volumes, and frequent comparisons with fresh spiking. The key behind these various approaches is to amplify the impact of NSB by exposing the compounds of interest to as large of a surface area as possible and by exposing as many times as possible, so that it will not go unnoticed.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.010
metaresearch head score (Gemma)0.009
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Methods · Consensus signal: Methods
Teacher disagreement score0.010
Threshold uncertainty score0.054

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0100.009
Meta-epidemiology (narrow)0.0020.002
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0020.002
Science and technology studies0.0020.004
Scholarly communication0.0050.004
Open science0.0020.004
Research integrity0.0040.005
Insufficient payload (model declined to judge)0.0070.012

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.033
GPT teacher head0.311
Teacher spread0.278 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreMethods

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations9
Published2017
Admission routes1
Has abstractyes

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