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Record W2741843236 · doi:10.1038/s41598-017-07613-x

Standardization of electroencephalography for multi-site, multi-platform and multi-investigator studies: insights from the canadian biomarker integration network in depression

2017· article· en· W2741843236 on OpenAlexafffundabout
Faranak Farzan, Sravya Atluri, Matthew Frehlich, Prabhjot Dhami, Killian Kleffner, Rae Price, Raymond W. Lam, Benício N. Frey, Roumen Milev, Arun Ravindran, Mary Pat McAndrews, Willy Wong, Daniel M. Blumberger, Zafiris J. Daskalakis, Fidel Vila‐Rodriguez, Alonso Esther, Colleen A. Brenner, Mario Liotti, Moyez Dharsee, Stephen R. Arnott, Kenneth Evans, Susan Rotzinger, Sidney H. Kennedy

Bibliographic record

VenueScientific Reports · 2017
Typearticle
Languageen
FieldNeuroscience
TopicFunctional Brain Connectivity Studies
Canadian institutionsSt. Michael's HospitalBaycrest HospitalMcMaster UniversityIndoc ResearchCanada Research ChairsQueen's UniversitySt. Joseph’s Healthcare HamiltonUniversity of British ColumbiaSimon Fraser UniversityUniversity Health NetworkUniversity of TorontoVancouver Coastal HealthCentre for Addiction and Mental Health
FundersCanadian Institutes of Health ResearchH. Lundbeck A/SGovernment of OntarioNatural Sciences and Engineering Research Council of CanadaPfizerServierOntario Brain Institute
KeywordsStandardizationComputer scienceData scienceDocumentationData integrationToolboxNeuroinformaticsData collectionPreprocessorElectroencephalographyData miningArtificial intelligenceNeurosciencePsychology

Abstract

fetched live from OpenAlex

Subsequent to global initiatives in mapping the human brain and investigations of neurobiological markers for brain disorders, the number of multi-site studies involving the collection and sharing of large volumes of brain data, including electroencephalography (EEG), has been increasing. Among the complexities of conducting multi-site studies and increasing the shelf life of biological data beyond the original study are timely standardization and documentation of relevant study parameters. We present the insights gained and guidelines established within the EEG working group of the Canadian Biomarker Integration Network in Depression (CAN-BIND). CAN-BIND is a multi-site, multi-investigator, and multi-project network supported by the Ontario Brain Institute with access to Brain-CODE, an informatics platform that hosts a multitude of biological data across a growing list of brain pathologies. We describe our approaches and insights on documenting and standardizing parameters across the study design, data collection, monitoring, analysis, integration, knowledge-translation, and data archiving phases of CAN-BIND projects. We introduce a custom-built EEG toolbox to track data preprocessing with open-access for the scientific community. We also evaluate the impact of variation in equipment setup on the accuracy of acquired data. Collectively, this work is intended to inspire establishing comprehensive and standardized guidelines for multi-site studies.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.139
metaresearch head score (Gemma)0.193
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: none
Teacher disagreement score0.797
Threshold uncertainty score0.737

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.1390.193
Meta-epidemiology (narrow)0.0010.001
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0050.009
Science and technology studies0.0050.005
Scholarly communication0.0060.003
Open science0.0060.008
Research integrity0.0010.002
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.112
GPT teacher head0.330
Teacher spread0.218 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations53
Published2017
Admission routes3
Has abstractyes

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