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Record W2744056944 · doi:10.1515/sg-2011-0016

Changes in Genetic Diversity of Whitebark Pine (<i>Pinus albicaulis</i>Engelm.) Associated with Inbreeding and White Pine Blister Rust Infection

2011· article· en· W2744056944 on OpenAlexaff
Andrew D. Bower, Sally N. Aitken

Bibliographic record

VenueSilvae genetica/Silvae Genetica · 2011
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicYeasts and Rust Fungi Studies
Canadian institutionsUniversity of British Columbia
FundersU.S. Forest ServiceU.S. Department of Agriculture
KeywordsBiologyInbreedingFixation indexGenetic diversityEcologyRust (programming language)ZoologyGenetic variationBotanyPopulationDemographyGenetic structureGenetics

Abstract

fetched live from OpenAlex

Abstract We investigated the association of inbreeding and infection by the introduced disease white pine blister rust (caused by the fungus Cronartium ribicola J. C. Fisch) with genetic diversity of whitebark pine ( Pinus albicaulis Engelm.) by genetically comparing cohorts of different ages in natural stands. Isozyme analysis of bud tissue was used to estimate expected and observed heterozygosity (H e and H o ), and Wright’s fixation index (F is ) for three age cohorts (seedling, young, and mature), sampled from 14 sites in British Columbia, Oregon, Idaho, and Montana. Comparison of genetic diversity parameters among cohorts within a site was used to assess the extent and persistence of inbreeding with age, while comparisons of parameters among sites within a cohort were used to assess the impact of the disease on genetic diversity. Significant evidence of inbreeding (F is &gt;0) was found in all age cohorts. When sites were stratified by level of blister rust infection, differences in F is and H o among cohorts were only significant when level of infection was low. A significant negative association was found between level of blister rust infection and H o in the mature cohort. This suggests that when differential selection due to blister rust is weak, more heterozygous individuals may be favored; however, more homozygous individuals may have higher fitness under higher blister rust levels

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesMeta-epidemiology (narrow)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.063
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0010.001
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0000.001
Science and technology studies0.0000.001
Scholarly communication0.0000.000
Open science0.0000.001
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.017
GPT teacher head0.205
Teacher spread0.188 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations3
Published2011
Admission routes1
Has abstractyes

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