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Record W2749838627

Adaptation to European latitudes through assimilation of wild diversity at the LuTFL1 locus altered architecture and promoted fiber production in flax.

2017· preprint· en· W2749838627 on OpenAlexaff
Rafał M. Gutaker, Maricris Zaidem, Yong‐Bi Fu, Axel Diederichsen, Oliver Smith, Roselyn Ware, Robin G. Allaby

Bibliographic record

Venuenot available
Typepreprint
Languageen
FieldAgricultural and Biological Sciences
TopicSoybean genetics and cultivation
Canadian institutionsPlant Biotechnology Institute
Fundersnot available
KeywordsDomesticationBiologyAlleleLocus (genetics)Adaptation (eye)Genetic architectureLocal adaptationGenetic diversityLatitudePopulationGeneGeneticsBotanyEvolutionary biologyQuantitative trait locusGeography
DOInot available

Abstract

fetched live from OpenAlex

After domestication in the Near East around 10,000 years ago several founder crops spread and adapted to European latitudes. On reaching northerly latitudes the architecture of domesticated flax changed becoming more suitable to fiber production over oil, with longer stems, smaller seeds and fewer axillary branches. Latitudinal adaptations in crops typically result in changes in flowering time, often involving the PEBP family of genes that also have the potential to influence plant architecture. We identify PEBP family genes in the flax genome, describe molecular diversity of two loci, LuTFL1 and LuTFL2 in wild and cultivated flax that vary over latitudinal range, and show that cultivated flax received LuTFL1 alleles from more northerly wild flax populations. Compared to a genomic background of population structure of flaxes over latitude determined using restriction site-associated loci, the LuTFL1 alleles display a level of differentiation that is consistent with selection both for a northern associated allele (III) and against a southern associated allele (I) in the north. We also demonstrate that LuTFL1 alleles are associated with differing flowering time, and through heterologous expression in Arabidopsis thaliana that LuTFL1 is a functional homolog of TFL1 in Arabidopsis thaliana and is capable of changing both flowering time and plant architecture. We conclude that specialized fiber flax types formed as a consequence of a natural adaptation of cultivated flax to higher latitudes.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.915
Threshold uncertainty score0.351

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.001
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.057
GPT teacher head0.243
Teacher spread0.185 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations1
Published2017
Admission routes1
Has abstractyes

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