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Record W2750886030 · doi:10.1074/jbc.m117.806893

Negatively charged residues in the first extracellular loop of the L-type CaV1.2 channel anchor the interaction with the CaVα2δ1 auxiliary subunit

2017· article· en· W2750886030 on OpenAlexafffund
Benoîte Bourdin, Julie Briot, Marie-Philippe Tétreault, Rémy Sauvé, Lucie Parent

Bibliographic record

VenueJournal of Biological Chemistry · 2017
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicIon channel regulation and function
Canadian institutionsUniversité de MontréalMontreal Heart Institute
FundersCanadian Institutes of Health ResearchHeart and Stroke Foundation of Canada
KeywordsCav1.2ExtracellularImmunoprecipitationProtein subunitGatingXenopusChemistryIntracellularBiophysicsCell biologyBiochemistryBiologyGene

Abstract

fetched live from OpenAlex

Voltage-gated L-type Ca V 1.2 channels in cardiomyocytes exist as heteromeric complexes. Co-expression of Ca V α2δ1 with Ca V β/Ca V α1 proteins reconstitutes the functional properties of native L-type currents, but the interacting domains at the Ca V 1.2/Ca V α2δ1 interface are unknown. Here, a homology-based model of Ca V 1.2 identified protein interfaces between the extracellular domain of Ca V α2δ1 and the extracellular loops of the Ca V α1 protein in repeats I (IS1S2 and IS5S6), II (IIS5S6), and III (IIIS5S6). Insertion of a 9-residue hemagglutinin epitope in IS1S2, but not in IS5S6 or in IIS5S6, prevented the co-immunoprecipitation of Ca V 1.2 with Ca V α2δ1. IS1S2 contains a cluster of three conserved negatively charged residues Glu-179, Asp-180, and Asp-181 that could contribute to non-bonded interactions with Ca V α2δ1. Substitutions of Ca V 1.2 Asp-181 impaired the co-immunoprecipitation of Ca V β/Ca V 1.2 with Ca V α2δ1 and the Ca V α2δ1-dependent shift in voltage-dependent activation gating. In contrast, single substitutions in Ca V 1.2 in neighboring positions in the same loop (179, 180, and 182–184) did not significantly alter the functional up-regulation of Ca V 1.2 whole-cell currents. However, a negatively charged residue at position 180 was necessary to convey the Ca V α2δ1-mediated shift in the activation gating. We also found a more modest contribution from the positively charged Arg-1119 in the extracellular pore region in repeat III of Ca V 1.2. We conclude that Ca V 1.2 Asp-181 anchors the physical interaction that facilitates the Ca V α2δ1-mediated functional modulation of Ca V 1.2 currents. By stabilizing the first extracellular loop of Ca V 1.2, Ca V α2δ1 may up-regulate currents by promoting conformations of the voltage sensor that are associated with the channel's open state.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.004
Threshold uncertainty score0.014

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0040.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.035
GPT teacher head0.265
Teacher spread0.230 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations21
Published2017
Admission routes2
Has abstractyes

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