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Record W2754201955 · doi:10.1080/07060661.2017.1378726

Pathogenic and genetic variability of<i>Fusarium verticillioides</i>from maize in northern Mexico

2017· article· en· W2754201955 on OpenAlexvenueno aff
Karla Yeriana Leyva‐Madrigal, Eduardo Sandoval‐Castro, Carlos Calderón‐Vázquez, Claudia Patricia Larralde‐Corona, Ignacio E. Maldonado‐Mendoza

Bibliographic record

VenueCanadian Journal of Plant Pathology · 2017
Typearticle
Languageen
FieldAgricultural and Biological Sciences
TopicMycotoxins in Agriculture and Food
Canadian institutionsnot available
FundersSecretaría de Investigación y Posgrado, Instituto Politécnico NacionalInstituto Politécnico Nacional
KeywordsBiologyGenetic diversityFusariumPopulationFungusPathogenPathogenic fungusGene flowMyceliumVirulenceAsexual reproductionSexual reproductionGenetic variationGenetic variabilityBotanyGeneticsGeneGenotype

Abstract

fetched live from OpenAlex

The filamentous fungus Fusarium verticillioides is a widely distributed pathogen that causes ear, stalk and root rot of maize. This fungus also produces mycotoxins that accumulate in maize kernels. As chemical control has proven to be insufficient, new and effective disease control measures must be implemented. An improved understanding of the diversity of pathogen populations is thus crucial. Here, a set of 83 F. verticillioides isolates from a major maize-growing region of Mexico was characterized at the pathogenic and genetic diversity levels. A pathogenicity assay on maize seedlings established that all isolates were pathogenic and variable for aggressiveness, with most causing major damage on maize roots (>50% of root rotted). Genetic analysis also revealed high levels of variability, as seen by the high number of haplotypes (76), the population diversity value according to effective number of alleles (6.32), gene diversity (0.80), the polymorphic index content (0.78) and Shannon’s information index (2.06). The analysed F. verticillioides population reproduces asexually, suggesting that the observed genetic and pathogenic diversity is not the result of sexual reproduction and is probably mediated by other evolutionary forces, such as mutation, gene flow, selection and hyphal anastomosis.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.043
Threshold uncertainty score0.086

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.001
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.013
GPT teacher head0.185
Teacher spread0.173 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations9
Published2017
Admission routes1
Has abstractyes

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