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Record W2762490715 · doi:10.24870/cjb.2017-a182

Response of Populus deltoides Bartr. ex Marsh genes under elevated CO2 through Next-Generation Sequencing (NGS)

2017· article· en· W2762490715 on OpenAlex

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

venuePublished in a venue whose home country is Canada.
no affNo Canadian affiliation: this work is invisible to an affiliation-only frame.
No Canadian affiliation. An affiliation-only frame, the usual design, would never have seen this work. It is one of the works that make the case for inverting the frame.

Bibliographic record

VenueCanadian Journal of Biotechnology · 2017
Typearticle
Languageen
FieldAgricultural and Biological Sciences
TopicPlant responses to elevated CO2
Canadian institutionsnot available
Fundersnot available
KeywordsMarshBiologyGeneDNA sequencingEvolutionary biologyBotanyComputational biologyGeneticsEcologyWetland

Abstract

fetched live from OpenAlex

The impact of climate change has attracted considerable attention globally. Atmospheric Carbon Dioxide (CO2) is expected to increase to 900 μmol mol-1 from present level of 400 μmol mol-1 by the end of 21st century. CO2 is a greenhouse gas that leads climate change have significantly affected structure and function of the terrestrial ecosystem, global carbon, water balance, and also crop productivity. These responses of the plant appear by altering gene expression pattern of different genes involved in anabolic and catabolic processes. We have conducted a study to see the response of genes to elevated CO2 inside open top chambers on Populus deltoides. Onemonth- old ramets were exposed for 180 days to treatment (CO2 800 μmol mol-1) and control (CO2 ~400 μmol mol-1). After completion of treatment, leaf tissues were outsourced to Sci-genome for transcriptome sequencing. This study demonstrated, higher (1754) number of transcript expression in treatment (119,306) compared to control (121,060). Differential gene expression analysis shown 1951 transcripts were down regulated while 2603 transcripts up regulated and 159,982 transcripts have no significance in treatment. Our results show that plants growing in an environment where atmospheric CO2 is higher may alter plant adaptation, productivity, vegetation and ecosystem health by changing; the first, number of genes and second, altering gene expression patterns. Such behavior may be a good indicator of developing adaptation strategies of the plant.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.001
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.093
Threshold uncertainty score0.993

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.001
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0010.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.076
GPT teacher head0.246
Teacher spread0.169 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it