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Record W2765746665 · doi:10.5539/jas.v9n11p34

Effect of Conservational and Conventional Tillage Systems on Functional Soil Archaea Diversity in Wheat-Pea Rotation Field

2017· article· en· W2765746665 on OpenAlexvenueno aff
Eunice Essel, Lingling Li, Chaochao Deng, Junhong Xie, Renzhi Zhang, Zhuzhu Luo, Liqun Cai

Bibliographic record

VenueJournal of Agricultural Science · 2017
Typearticle
Languageen
FieldEnvironmental Science
TopicMicrobial Community Ecology and Physiology
Canadian institutionsnot available
FundersGansu Education DepartmentGansu Agricultural UniversityNational Natural Science Foundation of China
KeywordsCrenarchaeotaThaumarchaeotaEuryarchaeotaArchaeaBiologyTillageConventional tillageAgronomyEcologyBacteria

Abstract

fetched live from OpenAlex

Soil borne archaea in agricultural systems is crucial for cycling of nutrient such as Nitrogen, Carbon and Sulphur. The objective of the study was to assess the effect of different tillage systems on functional archaea diversity in a 15 years cereal-legume rotation field using Illumina sequencing platform for archaea 16S rRNA gene. The treatments in the study included conventional tillage with stubble removed (T), no-till with stubble removed (NT), conventional tillage with stubble incorporated (TS) and no-till with stubble retained (NTS). The results showed that the dominant soil archaea phyla was Crenarchaeota (> 96%), followed by Euryarchaeota with a lower abundance of < 3% and then Parvarchaeota and other bacteria phyla made up < 1% across the treatments and depths. The treatment means were ranked as NT > NTS > TS > T for 16S rRNA number of OTUs, Shannon and Simpson indices calculated for the 0-10cm soil depth. Analysis of factor effect revealed that tillage but not stubble retention or their interaction significantly influenced (P < 0.01 and P < 0.05) 16S rRNA diversity. Non metric Multidimensional Scaling (NMDS) analysis clearly grouped the microbial communities according to depths. Linear Discriminant Analysis Effect Size (LEfSe) identified Crenarchaeota and Thaumarchaeota (to genus level) as significantly enriched clades in 0-10 cm depth of T while Euryarchaeota and Thermoplasmata were significantly enriched in TS. The conservational tillage systems (NT and NTS) promoted even distribution of archaea diversity while conventional tillage systems (T and TS) enriched the archaea communities identified in the study.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.004
Threshold uncertainty score0.007

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.016
GPT teacher head0.237
Teacher spread0.220 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2017
Admission routes1
Has abstractyes

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