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Record W2767052129 · doi:10.1111/cge.13158

Molecular analysis and genotype‐phenotype correlation of Diamond‐Blackfan anemia

2017· article· en· W2767052129 on OpenAlexafffundabout
Omri Avraham Arbiv, Geoff D.E. Cuvelier, Robert J. Klaassen, Conrad V. Fernandez, Nancy Robitaille, MacGregor Steele, Vicky R. Breakey, Sharon Abish, John K. Wu, Rajesh Kumar Sinha, Marinalda Boneli da Silva, Lisa Goodyear, Lawrence Jardine, JH Lipton, Catharine Corriveau-Bourque, Josée Brossard, Bruno Michon, Ibrahim Ghemlas, Nicolas Waespe, Bozana Zlateska, Lillian Sung, Michaela Cada, Yigal Dror

Bibliographic record

VenueClinical Genetics · 2017
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicRNA modifications and cancer
Canadian institutionsUniversity of TorontoInstitute for Clinical Evaluative SciencesHealth and Social Services Centre University Institute of Geriatrics of SherbrookeBC Children's HospitalCentre hospitalier de l'Université LavalCentre Hospitalier Universitaire de SherbrookeMcMaster Children's HospitalAlberta HealthJaneway Children's Health and Rehabilitation CentreUniversity of AlbertaSickKids FoundationAlberta Health ServicesPrincess Margaret Cancer CentreHospital for Sick ChildrenUniversity of SaskatchewanIzaak Walton Killam Health CentreAlberta Children's HospitalQueen's UniversityCentre Hospitalier Universitaire Sainte-JustineChildren's Hospital of Western OntarioCancerCare ManitobaChildren's Hospital of Eastern OntarioHealth Sciences CentreMontreal Children's Hospital
FundersC17 CouncilCanadian Institutes of Health ResearchAmerican Society of Hematology
KeywordsDiamond–Blackfan anemiaPhenotypeGenotypeGeneticsCorrelationGenotype-phenotype distinctionBiologyGeneRNA

Abstract

fetched live from OpenAlex

Diamond-Blackfan anemia (DBA) features hypoplastic anemia and congenital malformations, largely caused by mutations in various ribosomal proteins. The aim of this study was to characterize the spectrum of genetic lesions causing DBA and identify genotypes that correlate with phenotypes of clinical significance. Seventy-four patients with DBA from across Canada were included. Nucleotide-level mutations or large deletions were identified in 10 ribosomal genes in 45 cases. The RPS19 mutation group was associated with higher requirement for chronic treatment for anemia than other DBA groups. Patients with RPS19 mutations, however, were more likely to maintain long-term corticosteroid response without requirement for further chronic transfusions. Conversely, patients with RPL11 mutations were less likely to need chronic treatment. Birth defects, including cardiac, skeletal, hand, cleft lip or palate and genitourinary malformations, also varied among the various genetic groups. Patients with RPS19 mutations had the fewest number of defects, while patients with RPL5 had the greatest number of birth defects. This is the first study to show differences between DBA genetic groups with regards to treatment. Previously unreported differences in the rate and types of birth defects were also identified. These data allow better patient counseling, a more personalized monitoring plan, and may also suggest differential functions of DBA genes on ribosome and extra-ribosomal functions.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.180
Threshold uncertainty score0.371

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.027
GPT teacher head0.348
Teacher spread0.321 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations36
Published2017
Admission routes3
Has abstractyes

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