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Record W2771417165 · doi:10.24870/cjb.2017-a228

Docking Studies of Hispolon Mediated Human NF-κβ Inhibition and In-Silico Development of Hispolon Derivatives Towards Cancer Treatment

2017· article· en· W2771417165 on OpenAlexvenueno aff
Hrudayanath Thatoi, Mrunmaya Kumar Panda, Manish Paul

Bibliographic record

VenueCanadian Journal of Biotechnology · 2017
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicNF-κB Signaling Pathways
Canadian institutionsnot available
Fundersnot available
KeywordsIn silicoPhellinus linteusDocking (animal)CancerApoptosisChemistryCancer researchComputational biologyBiologyBiochemistryMedicineMyceliumGeneGenetics

Abstract

fetched live from OpenAlex

In-silico drug designing for better anticancer therapeutics targeting human NF-κB, a pivotal enzyme involved in cancer regulating pathway. Hispolon, a black hoof mushroom (Phellinus linteus) or shaggy bracket mushroom (Inonotus hispidus) derived polyphenolic compound is structurally homologous with Curcumin and possess the NF-κB inhibitory efficiency as an anticancer agent. However, the in-silico studies related to Hispolon mediated inhibition of NF-κB activity and its mechanism of action has not yet been investigated so far. The present paper reports in-silico studies carried out to investigate the detailed mechanism of Hispolon mediated inhibition of NF-κB and designing of new potent derivatives of Hispolon having anticancer activity. Docking, Binding free energy analysis, Drug designing ADMET and IC50 has been performed for the fulfilment of above mentioned objective. DRG2 compound (ΔG= -30.180 kcal/mol) is the most potent in binding with human NF-κB among all 10 designed Hispolon derivatives. Met469 and Glu470 of human NF-κB makes an additional interaction with one of the hydrogen atom of 5-methoxy group of ligand’s benzene ring. Methoxy group placed on the -ortho and two -para position of benzene ring and the –meta positioned hydroxyl group of the compound plays crucial role in strengthening the binding energy with human NF-κB. ADMET analysis also confirmed the drug-likeness and efficiency of DRG2 with NF-κB. In-depth structural, molecular modelling, docking and binding energy studies helps to redesign Hispolon to better compound that might have some additional inhibitory effect on human NF-κB thus can be used as anticancer therapeutics.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Simulation or modeling · Consensus signal: Simulation or modeling
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.004
Threshold uncertainty score0.015

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0010.000
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0040.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.051
GPT teacher head0.322
Teacher spread0.271 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designSimulation or modeling
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2017
Admission routes1
Has abstractyes

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