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Record W2773167758 · doi:10.9778/cmajo.20170041

Rates of colonization with extended-spectrum β-lactamase-producing <i>Escherichia coli</i> in Canadian travellers returning from South Asia: a cross-sectional assessment

2017· article· en· W2773167758 on OpenAlexaffvenueabout
Gisele Peirano, Daniel B. Gregson, Susan Kuhn, Otto G. Vanderkooi, Diego B. Nóbrega, Johann Pitout

Bibliographic record

VenueCMAJ Open · 2017
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicAntibiotic Resistance in Bacteria
Canadian institutionsCalgary Laboratory ServicesUniversity of Calgary
Fundersnot available
KeywordsOdds ratioConfidence intervalDemographyColonizationMedicinePopulationEscherichia coliBeta-lactamaseVeterinary medicineInternal medicineMicrobiologyEnvironmental healthBiology

Abstract

fetched live from OpenAlex

<h3>Background:</h3> A previous study in Calgary showed that travel to India was associated with high risk of community-onset infections with extended-spectrum β-lactamase (ESBL)-producing <i>Escherichia coli</i>. We performed a follow-up study to determine the rate of rectal acquisition of ESBL-producing <i>E. coli</i> among travellers to South Asia and to identify the behaviours putting such travellers at high risk for acquiring ESBL-producing <i>E. coli.</i> <h3>Methods:</h3> The study was performed at a travel clinic in Calgary. Travellers 18 years or older who were planning to visit South Asia for a period of at least 5 days were included. Three rectal swabs were obtained, and 2 questionaires were administered (before and after travel). <h3>Results:</h3> A total of 149 travellers participated between January 2012 and July 2014; of these, 116 (78%) provided rectal swabs upon return to Calgary and completed both pre- and post-travel questionaires. Of the 109 travellers without colonization with ESBL-producing <i>E. coli</i> upon enrollment, 70 (64%) acquired ESBL-producing <i>E. coli</i> during travel. Of the 90 participants who visited India, 66 (73%) were positive for ESBL-producing <i>E. coli</i> upon their return to Calgary. Most ESBL-producing <i>E. coli </i>specimens were identified as producing the enzyme CTX-M-15. Behaviours associated with a statistically significant risk of acquiring ESBL-producing <i>E. coli</i> included visiting India (odds ratio [OR] 19.9, 95% confidence interval [CI] 4.5-88.8), consuming meals with the local population (OR 6.9, 95% CI 1.2-39.6), taking any type of antibiotic during travel (OR 4.3, 95% CI 1.3-14.3) and travelling for any purpose other than business (OR 12.4, 95% CI 2.8-55.2). <h3>Interpretation:</h3> In this study, travel to India was associated with the highest risk of acquiring ESBL-producing <i>E. coli</i> relative to travel to other countries in South Asia. Nonbusiness travel, consuming foods with the local population and the use of antibiotics while travelling were associated with an increased risk of acquiring these antibiotic-resistant organisms while in India. <b>Trial registration:</b> ClinicalTrials.gov, no. NCT01296165.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.192
Threshold uncertainty score0.910

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0010.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.020
GPT teacher head0.307
Teacher spread0.287 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations22
Published2017
Admission routes3
Has abstractyes

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