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Osteopontin is associated with Citrobacter rodentium attachment and formation of attaching-effacing lesions.

2011· article· en· W2774745410 on OpenAlexaff
A. Tang, L Liu, Eytan Wine

Bibliographic record

VenueInflammatory Bowel Diseases · 2011
Typearticle
Languageen
FieldMedicine
TopicBone and Dental Protein Studies
Canadian institutionsUniversity of Alberta
Fundersnot available
KeywordsCitrobacter rodentiumCitrobacterMicrobiologyOsteopontinPathologyMedicineBiologyImmunologyEnterobacteriaceaePathogenEscherichia coliBiochemistry

Abstract

fetched live from OpenAlex

Osteopontin (OPN) is a complex glyco-phosphoprotein implicated in a number of biological processes, including inflammatory and autoimmune conditions. OPN is increased in the serum and mucosa of patients with inflammatory bowel diseases (IBD) and mediates innate and adaptive immunity in human disease and animal models of inflammation. However, the role of OPN in IBD pathogenesis is yet to be defined. Recently we showed that OPN−/− mice are partially protected from colitis induced by Citrobacter rodentium (an infectious model of IBD), as indicated by reduced epithelial cell hyperplasia and bacterial colonization of infected mice when OPN was absent. Therefore, our hypothesis was that OPN mediates gut inflammation by promoting bacterial attachment to cells. The objective of this study was to determine the potential effect of OPN on bacterial attachment and the formation of attaching-effacing (A/E) lesions induced by C. rodentium infection. HeLa, NIH 3T3, and HT-29 cells were incubated with C. rodentium for 4 h and then fixed and stained with phalloidin (to visualise actin in A/E lesions), anti-OPN antibody, and DAPI. Co-localization of bacteria, A/E lesions, and OPN was examined using laser confocal immunofluorescence microscopy. Effects of OPN on A/E lesions were assessed by addition of varying concentrations of bovine or recombinant OPN to the growth medium and enumeration of A/E lesions using systematic quantification. HeLa cells were transfected with a FLAG-tagged OPN-expression vector, and then incubated with C. rodentium to assess effects of OPN over-expression on A/E lesions.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.001
Threshold uncertainty score0.003

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0010.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.021
GPT teacher head0.248
Teacher spread0.226 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2011
Admission routes1
Has abstractyes

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