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Record W2776412089

Clinical and genetic studies in autosomal recessive ataxias

2017· dissertation· en· W2776412089 on OpenAlexaboutno aff
Michael Parkinson

Bibliographic record

VenueUCL Discovery (University College London) · 2017
Typedissertation
Languageen
FieldNeuroscience
TopicGenetic Neurodegenerative Diseases
Canadian institutionsnot available
Fundersnot available
KeywordsAtaxiaDysarthriaDysmetriaSpinocerebellar ataxiaMedicineRating scalePediatricsTrinucleotide repeat expansionInternal medicinePhysical therapyPsychologyAudiologyGeneticsBiologyPsychiatryAllele
DOInot available

Abstract

fetched live from OpenAlex

167 patients with the recessive repeat expansion disorder Friedreich’s ataxia (FRDA) were recruited as part of the European FRDA Consortium for Translational Studies (EFACTS) and underwent longitudinal clinical assessment including validated and standardized clinical and functional rating scales. The mean age at onset was 13.7±9.6 years (range 1-55) and disease duration 20.5±11.2 years (range 3-55). The smaller repeat expansion (GAA1 size) correlated with age at onset, Activities of Daily Living (ADL), Scale for the Assessment and Rating of Ataxia (SARA), Inventory of Non-Ataxic Symptoms (INAS) count & Spinocerebellar Degeneration Functional Score (SDFS). 125 patients were seen after 1 year, and 116 after 2 years. Disease progression could be measured using these rating scales: SARA increased over 2 years by 1.3±3.1, ADL by 2.0±3.2 and SDFS by 0.3±0.6. There was no statistical difference in INAS count. A majority of patients could not complete the Spinocerebellar Ataxia Functional Index (SCAFI) which was deemed inappropriate in FRDA. Two novel FXN mutations were identified, as well as a probable macrodeletion. No compound heterozygous exonic deletions were found amongst 1768 cases referred with a possible diagnosis of FRDA, indicating that these deletions are extremely rare. Twenty-six patients with autosomal recessive spastic ataxia of Charlevoix-Saguenay (ARSACS) were recruited (mean age onset 15.0±17.4, range 0-51); mean disease duration 28.5±12.9, range 8-56). Loss of mobility, dysarthria, dysphagia, ataxia, sensory loss, square wave jerks and saccadic dysmetria were less common in ARSACS compared to FRDA; nystagmus, spasticity and hyperreflexia were more common. Nine novel SACS mutations were identified. Retinal Nerve Fibre Layer (RNFL) thickening on ocular coherence tomography (OCT) was found to be a specific (99.4%) and sensitive (100%) marker of ARSACS with positive predictive value of 94.4%, amongst 191 patients with ataxia, using a cut-off thickness of 119μm.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.003
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.003
Threshold uncertainty score0.008

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.003
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.001
Science and technology studies0.0010.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0020.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.058
GPT teacher head0.326
Teacher spread0.269 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations1
Published2017
Admission routes1
Has abstractyes

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