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Record W2780601052 · doi:10.1038/sdata.2017.181

An open resource for transdiagnostic research in pediatric mental health and learning disorders

2017· article· en· W2780601052 on OpenAlexaff
Lindsay Alexander, Jasmine Escalera, Lei Ai, Charissa Andreotti, Karina Febre, Alexander Mangone, Natan Vega Potler, Nicolas Langer, Alexis Alexander, Meagan Kovacs, Shannon Litke, Bridget O’Hagan, J. E. Andersen, Batya Bronstein, Anastasia Bui, Marijayne Bushey, H. W. Butler, Victoria Castagna, Nicolas L. Camacho, Elisha Chan, Danielle Citera, Jon Clucas, Samantha Cohen, Sarah Dufek, Megan Eaves, Brian Fradera, Judith Gardner, Natalie Grant-Villegas, Gabriella Green, Emily Hart, Shana Harris, Megan K. Horton, Danielle Kahn, Katherine E. Kabotyanski, Bernard Z. Karmel, Simon P. Kelly, Kayla Kleinman, Bonhwang Koo, Eliza Kramer, Elizabeth M. Lennon, Catherine Lord, Ginny Mantello, Amy Margolis, Kathleen R. Merikangas, Judith Milham, Giuseppe Minniti, Rebecca Neuhaus, Alexandra M. Levine, Yael Osman, Lucas C. Parra, Ken Pugh, Amy Racanello, Anita Restrepo, Tian Saltzman, Batya Septimus, Russell H. Tobe, Rachel Waltz, Anna Williams, Anna J. Yeo, F. Xavier Castellanos, Arno Klein, Tomáš Paus, Bennett L. Leventhal, R. Cameron Craddock, Harold S. Koplewicz, Michael P. Milham

Bibliographic record

VenueScientific Data · 2017
Typearticle
Languageen
FieldNeuroscience
TopicFunctional Brain Connectivity Studies
Canadian institutionsBaycrest HospitalUniversity of Toronto
FundersStavros Niarchos FoundationNational Institute of Environmental Health SciencesChild Mind InstituteStrongHearst Foundations
KeywordsBiobankNeuroimagingOpen scienceMental healthPsychologyPsychopathologyData sharingData scienceComputer scienceMedicinePsychiatryBioinformaticsAlternative medicine

Abstract

fetched live from OpenAlex

Technological and methodological innovations are equipping researchers with unprecedented capabilities for detecting and characterizing pathologic processes in the developing human brain. As a result, ambitions to achieve clinically useful tools to assist in the diagnosis and management of mental health and learning disorders are gaining momentum. To this end, it is critical to accrue large-scale multimodal datasets that capture a broad range of commonly encountered clinical psychopathology. The Child Mind Institute has launched the Healthy Brain Network (HBN), an ongoing initiative focused on creating and sharing a biobank of data from 10,000 New York area participants (ages 5-21). The HBN Biobank houses data about psychiatric, behavioral, cognitive, and lifestyle phenotypes, as well as multimodal brain imaging (resting and naturalistic viewing fMRI, diffusion MRI, morphometric MRI), electroencephalography, eye-tracking, voice and video recordings, genetics and actigraphy. Here, we present the rationale, design and implementation of HBN protocols. We describe the first data release (n=664) and the potential of the biobank to advance related areas (e.g., biophysical modeling, voice analysis).

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.025
metaresearch head score (Gemma)0.088
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesOpen science
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: Not applicable
GenreCandidate signal: Dataset · Consensus signal: Dataset
Teacher disagreement score0.996
Threshold uncertainty score0.570

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0250.088
Meta-epidemiology (narrow)0.0010.001
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0080.009
Science and technology studies0.0030.001
Scholarly communication0.0040.005
Open science0.0040.016
Research integrity0.0020.002
Insufficient payload (model declined to judge)0.1700.064

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.303
GPT teacher head0.462
Teacher spread0.159 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

Study designNot applicable
Domainnot available
GenreDataset

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations723
Published2017
Admission routes1
Has abstractyes

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