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Record W2782441719 · doi:10.5539/jmbr.v8n1p8

Novel Mycoplasma Agalactiae with new P30 Protein Pattern by Major Change in 17 Amino Acids

2018· article· en· W2782441719 on OpenAlexvenueno aff
M Babazadeh, S A Pourbakhsh, Zahra Noormohammadi, Majid Esmaelizad, Hamid Reza Goudarzi

Bibliographic record

VenueJournal of Molecular Biology Research · 2018
Typearticle
Languageen
FieldImmunology and Microbiology
TopicMicrobial infections and disease research
Canadian institutionsnot available
FundersRazi Vaccine and Serum Research Institute
KeywordsGenBankBiologyMicrobiologyGeneVirologyGenetics

Abstract

fetched live from OpenAlex

M. agalactiae (Mycoplasma agalactiae) is the main agent of CA (contagious agalactia) that is primarily disease of dairy sheep and goats. In Iran, a three-valent Agalactia inactivated vaccine were prepared based on three M. agalactiae isolated from milk secretion of sheep and goat of Taleghan, Shiraz and Lorestan and preventive policies against CA disease founded in Razi Institute since 1966. The P30 is a specific and stable lipoprotein of M. agalactiae. In this study, complete coding sequence of P30 gene of three Iranian vaccine strains and ten recently field isolates were analyzed in nucleotide and protein levels by bioinformatics tools. Interestingly, results observed a novel protein pattern K106VLKTKEIRLSQERKLS122 in P30 protein of vaccine strains compared to field isolates and the other available sequences in GenBank. Our findings demonstrated different B and T cell epitope patterns in Iranian vaccine strains. We suggested that the major change in P30 protein pattern may be occurred due to mutation during adaptation process in PPLO (Pleuropneumonia-Like Organisms) broth media.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.002
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesInsufficient payload (model declined to judge)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.025
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0020.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.001
Science and technology studies0.0000.001
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.043
GPT teacher head0.360
Teacher spread0.317 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2018
Admission routes1
Has abstractyes

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