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Record W2783442971 · doi:10.3389/fimmu.2017.01844

Minimum Information about T Regulatory Cells: A Step toward Reproducibility and Standardization

2018· article· en· W2783442971 on OpenAlexaff
Anke Fuchs, Mateusz Gliwiński, Nathali Grageda, Rachel Spiering, Abul K. Abbas, Silke Appel, Rosa Bacchetta, Manuela Battaglia, David Berglund, Bruce R. Blazar, Jeffrey A. Bluestone, Martin Bornhäuser, Anja ten Brinke, Todd M. Brusko, Nathalie Cools, María Cristina Cuturi, Edward K. Geissler, Nick Giannoukakis, Karolina Gołąb, David A. Hafler, S. Marieke van Ham, Joanna Hester, Keli Hippen, Mauro Di Ianni, Nataša Ilić, John D. Isaacs, Fadi Issa, Dorota Iwaszkiewicz‐Grześ, Elmar Jaeckel, Irma Joosten, David Klatzmann, Hans J. P. M. Koenen, Cees van Kooten, Olle Korsgren, Karsten Kretschmer, Megan K. Levings, Natalia Marek-Trzonkowska, Marc Martínez‐Llordella, Djordje Miljković, Kingston H. G. Mills, Joana P. Miranda, Ciriaco A. Piccirillo, Amy Putnam, Thomas Ritter, Maria Grazia Roncarolo, Shimon Sakaguchi, Silvia Sánchez‐Ramón, Birgit Sawitzki, Ljiljana Sofronić‐Milosavljević, Megan Sykes, Qizhi Tang, Marta Vives‐Pi, Herman Waldmann, Piotr Witkowski, Kathryn J. Wood, Silvia Gregori, Catharien M. U. Hilkens, Giovanna Lombardi, Phillip Lord, Eva Martínez‐Cáceres, Piotr Trzonkowski

Bibliographic record

VenueFrontiers in Immunology · 2018
Typearticle
Languageen
FieldImmunology and Microbiology
TopicT-cell and B-cell Immunology
Canadian institutionsMcGill University Health CentreBC Children's HospitalUniversity of British Columbia
FundersNational Institute of Allergy and Infectious DiseasesMedical Research CouncilNational Institute of Diabetes and Digestive and Kidney DiseasesNational Heart, Lung, and Blood InstituteVersus ArthritisEuropean Cooperation in Science and TechnologyAcademy of Medical SciencesBritish Heart FoundationNational Institute for Health and Care Research
KeywordsStandardizationMedicineImmunologyPreclinical testingClinical trialComputational biologyBioinformaticsRisk analysis (engineering)Computer scienceBiologyMedical physicsPathology

Abstract

fetched live from OpenAlex

Cellular therapies with CD4+ T regulatory cells (Tregs) hold promise of efficacious treatment for the variety of autoimmune and allergic diseases as well as posttransplant complications. Nevertheless, current manufacturing of Tregs as a cellular medicinal product varies between different laboratories, which in turn hampers precise comparisons of the results between the studies performed. While the number of clinical trials testing Tregs is already substantial, it seems to be crucial to provide some standardized characteristics of Treg products in order to minimize the problem. We have previously developed reporting guidelines called minimum information about tolerogenic antigen-presenting cells, which allows the comparison between different preparations of tolerance-inducing antigen-presenting cells. Having this experience, here we describe another minimum information about Tregs (MITREG). It is important to note that MITREG does not dictate how investigators should generate or characterize Tregs, but it does require investigators to report their Treg data in a consistent and transparent manner. We hope this will, therefore, be a useful tool facilitating standardized reporting on the manufacturing of Tregs, either for research purposes or for clinical application. This way MITREG might also be an important step toward more standardized and reproducible testing of the Tregs preparations in clinical applications.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.404
metaresearch head score (Gemma)0.371
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesMetaresearch
Consensus categoriesMetaresearch
DomainCandidate signal: Reporting · Consensus signal: none
Study designCandidate signal: Theoretical or conceptual · Consensus signal: none
GenreCandidate signal: Methods · Consensus signal: Methods
Teacher disagreement score0.596
Threshold uncertainty score0.734

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.4040.371
Meta-epidemiology (narrow)0.0020.002
Meta-epidemiology (broad)0.0050.003
Bibliometrics0.0070.005
Science and technology studies0.0030.012
Scholarly communication0.0120.013
Open science0.0070.009
Research integrity0.0060.016
Insufficient payload (model declined to judge)0.0020.002

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.007
GPT teacher head0.212
Teacher spread0.205 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; the direct Gemma label and the distilled Codex classifier agree on what is shown here.

Study designTheoretical or conceptual
DomainReporting
GenreMethods

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations56
Published2018
Admission routes1
Has abstractyes

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