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Record W2785914404 · doi:10.1139/cjfr-2017-0446

Spatial genetic structure, population dynamics, and spatial patterns in the distribution of <i>Ocotea catharinensis</i> from southern Brazil: implications for conservation

2018· article· en· W2785914404 on OpenAlexvenueno aff
Tiago Montagna, Miguel Busarello Lauterjung, Rafael Candido‐Ribeiro, Juliano Zago da Silva, Márcia Patrícia Hoeltgebaum, Newton Clóvis Freitas da Costa, Alison Paulo Bernardi, Maurício Sedrez dos Reis

Bibliographic record

VenueCanadian Journal of Forest Research · 2018
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicGenetic diversity and population structure
Canadian institutionsnot available
FundersFundação de Amparo à Pesquisa e Inovação do Estado de Santa CatarinaConselho Nacional de Desenvolvimento Científico e TecnológicoInstituto Chico Mendes de Conservação da BiodiversidadeCoordenação de Aperfeiçoamento de Pessoal de Nível Superior
KeywordsGenetic diversityBiologyGenetic structureEcologyFixation indexEffective population sizePopulationPopulation sizeGenetic variationEndangered speciesHabitatDemography

Abstract

fetched live from OpenAlex

In this study, we employ an integrated demographic–genetic approach with the aim of informing efforts to conserve Ocotea catharinensis Mez., an endangered tree species from the Brazilian Atlantic Rainforest. After establishing two permanent plots (15 and 15.5 ha) within protected areas in Santa Catarina state, Brazil, we evaluated demographic aspects (density, recruitment, mortality, and growth), spatial pattern, genetic diversity, and spatial genetic structure (SGS) in three categories (seedlings, juveniles, and reproductive individuals) over 2 years. Studied populations presented low recruitment of individuals and low rates of increment in diameter and height. Aggregation was the main spatial pattern observed for both populations. High levels of genetic diversity were estimated for both populations, as well as high levels of fixation index, signaling the risk of losing genetic diversity over generations. Significant SGS was found for both populations, reflecting nonrandom distribution of the genotypes. Demographic and genetic surveys also allowed the estimation of minimum viable areas for genetic conservation (>170 ha), deme sizes (around 10 ha), and distances for seed collection (at least 60 m). Effective population size is restricted in studied populations, locally threatening the species perpetuation over generations. Further research can clarify how this condition will change in subsequent years.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.001
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.055
Threshold uncertainty score0.109

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.001
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.001
Science and technology studies0.0010.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.022
GPT teacher head0.289
Teacher spread0.267 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations12
Published2018
Admission routes1
Has abstractyes

Explore more

Same venueCanadian Journal of Forest Research→Same topicGenetic diversity and population structure→French-language works237,207→