MétaCan
Menu
Back to cohort
Record W2789318789 · doi:10.1093/jcag/gwy009.271

A271 THE HELICOBACTER PYLORI VACA TOXIN IMPAIRS LYSOSOMAL CALCIUM CHANNEL TRPML1 ACTIVITY TO PROMOTE COLONIZATION

2018· article· en· W2789318789 on OpenAlexaff
Mariana Capurro, Laura Greenfield, Harikesh S. Wong, Lisa A. Robinson, Nicola L. Jones

Bibliographic record

VenueJournal of the Canadian Association of Gastroenterology · 2018
Typearticle
Languageen
FieldNursing
TopicMicrobial Metabolites in Food Biotechnology
Canadian institutionsSickKids FoundationHospital for Sick ChildrenUniversity of Toronto
Fundersnot available
KeywordsIntracellularBiologyVacuoleAutophagyLysosomeCell biologyHelicobacter pyloriCalcium in biologyEndosomeCytoplasmBiochemistryApoptosis

Abstract

fetched live from OpenAlex

Helicobacter pylori (H. pylori) is a proven carcinogen for gastric cancer. The vacuolating cytotoxin A (VacA) is a bacterial virulence factor that promotes more severe disease and gastric colonization. VacA generates a unique reservoir for H. pylori within gastric cells conferring bacterial survival advantage. Normally the lysosome and autophagy pathways target and eliminate intracellular pathogens. VacA disrupts the endolysosomal pathway to form large intracellular vacuoles and impairs host-cell autophagy to generate the intracellular niche. However, the mechanism by which VacA alters the endolysosomal pathway is unknown. Proper vesicular trafficking, lysosomal biogenesis and autophagy pathway require a functional Mucolipin Transient Receptor Membrane Calcium channel 1 (TRPML1). Interestingly, TRPML1 deficient cells display enlarged vacuoles and disrupted autophagy, as observed in VacA-treated cells. Furthermore, TRPML1 deficient mice display hypergastrinemia and hypochlorhydria, conditions observed during H. pylori infections. Hypothesis: We hypothesized that VacA inhibits TRPML1 to promote an intracellular niche. We employed gastric cells, murine wild type and trpml1 -/- and human organoid models as well as in vivo murine infection in wild type and trpml1 -/- mice using VacA+ and isogenic VacA mutant H. pylori. We found elevated intraluminal lysosomal calcium levels in VacA-treated gastric adenocarcinoma (AGS) cells consistent with disrupted TRPML1 activity. Furthermore, using a small molecule agonist to activate TRPML1 in VacA+H. pylori-infected human gastric cell lines and organoids restores normal lysosomal and autophagic function, eliminating the intracellular protective niche and resulting in efficient bacterial killing. Consistent with these observations, we found that VacA+ H. pylori infected mice displayed intracellular bacteria in parietal cells. Similarly, the enlarged lysosomal-like vacuoles present in the parietal cells of trpml1-null mice were colonized by mutant VacA-H. pylori. Altogether, we identify TRPML1 as a target that VacA exploits to evade host killing. We provide initial evidence that TRPML1 could serve as the first non-bacterial target to kill intracellular H. pylori. In this era of increasing antibiotic resistance and urgent need for research and development of new antimicrobials, we expect that TRPML1 agonists could be explored as novel therapies against intracellular pathogens. CAG, CIHR

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.001
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.327
Threshold uncertainty score0.747

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.001
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0010.000
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.011
GPT teacher head0.243
Teacher spread0.232 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations2
Published2018
Admission routes1
Has abstractyes

Explore more

Same venueJournal of the Canadian Association of GastroenterologySame topicMicrobial Metabolites in Food BiotechnologyFrench-language works237,207