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Record W2789590461 · doi:10.1093/jcag/gwy009.315

A315 EFFECT OF CONTINUOUS ADMINISTRATION OF FLAXSEED AND FLAXSEED COMPONENTS ON THE GUT MICROBIOTA IN FEMALE MICE

2018· article· en· W2789590461 on OpenAlexaffabout
Zhen Lin, Amel Taïbi, Dion Lepp, Krista A. Power, Lilian U. Thompson, Elena M. Comelli

Bibliographic record

VenueJournal of the Canadian Association of Gastroenterology · 2018
Typearticle
Languageen
FieldMedicine
TopicPhytoestrogen effects and research
Canadian institutionsUniversity of OttawaAgriculture and Agri-Food CanadaUniversity of Toronto
Fundersnot available
KeywordsUniFracCaecumGut floraFecesBiologyAberrant crypt fociAzoxymethaneFood scienceBasal (medicine)Internal medicineColorectal cancerEndocrinologyImmunologyBiochemistryMicrobiologyCancerGeneticsGene16S ribosomal RNAMedicineColonic disease

Abstract

fetched live from OpenAlex

Flaxseed (FS) contains FS oil (FSO), α-linolenic acid (ALA); lignan, secoisolariciresinol diglucoside (SDG); and 30% dietary fiber. FS and SDG have previously been shown to decrease early markers of colon cancer such as reducing epithelial cell proliferation and number of aberrant crypts and aberrant crypt foci. SDG and fiber are bio-transformed by the gut microbiota into enterolignans and short-chain fatty acid, respectively. These are at least partially responsible for FS beneficial effects. However, a comprehensive analysis of the effects of FS and its components on the gut microbiota is lacking. To investigate the effect of continuous administration of FS or FS components, FSO and SDG, on the gut microbiota in C57BL/6 mice. Fifty-six female C57BL/6 mice 4–5 weeks of age were randomly assigned into one of the four diet groups and fed for 3 weeks: i) Basal AIN-93G, ii) 10% FS, iii) 37% FSO or iv) 1.48% SDG. The experimental diets were supplemented with their respective components, FSO and SDG, at the level present in the FS and formulated to ensure that diets were isocaloric. After 21 days of intervention, the mice were sacrificed and feces and caecum contents (CC) were collected. 16S rRNA gene sequencing was performed on DNA extracted from CC (day 21) or feces collected at the baseline (day 0) or day 21 on a MiSeq instrument. UniFrac distances were calculated and β-diversity was assessed by PERMANOVA and principal coordinate analysis (PCoA) with QIIME. In the longitudinal analysis, PCoA of unweighted UniFrac distance matrixes resulted in 2 predominant clusters associated with the FS and BD/FSO/SDG diets in fecal samples. In line with this, at sacrifice samples clustered based on dietary treatment but FSO could not be distinguished from BD in both caecum and feces. Taxa known to be involved in enterolignans production were identified in the FS group. FS and SDG diet modify gut microbiota diversity in a different manner. Separation between FS and SDG clusters suggest that effect of FS is due not only to its SDG content but also to its fiber. This is significant as it suggests that FS and FS components act in both a differential and a complementary manner to potentiate positive health outcomes in the colon. NSERC (LUT, EMC), NSERC Canada Graduate Scholarship for Master’s to ZL. Lawson Family Chair in Microbiome Nutrition Research at the University of Toronto (EMC).

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.002
Threshold uncertainty score0.008

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0010.000
Science and technology studies0.0000.001
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0010.002
Insufficient payload (model declined to judge)0.0020.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.010
GPT teacher head0.261
Teacher spread0.251 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

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Citations0
Published2018
Admission routes2
Has abstractyes

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