A196 IDENTIFICATION OF AN IMMUNOSUPPRESSIVE DOMAIN IN HUMAN BETARETROVIRUS
Bibliographic record
Abstract
Primary biliary cholangitis (PBC) is a slowly progressing autoimmune liver disease characterized by immune destruction of the interlobular bile ducts. While the etiology of PBC is unknown, it is thought to involve an environmental trigger in a genetically susceptible individual. Among environmental factors studied to date, only the human betaretrovirus (HBRV) has been reproducibly detected in PBC patients’ biliary epithelium. Recent studies have shown that the majority of PBC patients as well as proportion of patients with AIH and cryptogenic cirrhosis have evidence of HBRV RNA and proviral integrations in their biliary epithelium Previous studies suggest that PBC patiens make proinflammatory responses to HBRV proteins. Using overlapping peptides of the HBRV Gag and Env, we have found that 38% of PBC patients had memory CD8+ T-cell responses to HBRV Gag with intracellular IFN-γ and TNF-α production. Whereas only 7% of patients demonstrated proinflammtory responses by T-cells to HBRV Env stimulation in identical experiments. The finding of significant diminished proinflammatory T-cell response to HBRV Env versus HBRV Gag in PBC patients and our prior experience of finding diminished humoral responses to HBRV Env suggested a hypothesis that the HBRV Env may contain an immunosuppressive domain (ISD), a highly conserved sequence in transmembrane (TM) protein of retroviruses (such as HIV-1, MuLV and HERV-K) that induces immunoregulatory effect on the immune system In order to determine whether HBRV Env contains an ISD, we used 85 overlapping 18-mer individual HBRV peptides corresponding to SU and TM proteins to stimulate healthy PBMC. We examined whether individual peptides induced IL-10, IL-4, and IL-6 secretion. PBMCs (3 × 105 cells/well) from a healthy donor were incubated with individual HBRV SU and TM peptides for 24 hrs prior to collection of the supernatants. IL-10, IL-4, and IL-6 levels were then measured by Mesoscale analysis We identified a single peptide homologous to other retroviral ISDs located in HBRV TM protein that lead to IL-10, IL-4, and IL-6 production. In order to validate the identification of the HBRV ISD we repeated the experiment using HBRV ISD sequences with a single AA difference. The mutations were selected based on the homology of the potential HBRV ISD with known conserved ISDs in other retroviruses. Accordingly, we were able to identify the functionally important AAs in the ISD within the HBRV TM that triggered IL-10, IL-4, and IL-6 production by selectively altering the AAs in the HBRV ISD sequence These studies are important because they show how HBRV potentially avoids the immune attack to HBRV Env and tolerizes the host to viral infection. Further studies will be required to determine its other functional properties as well as the implications of this finding surrounding the pathophysiology underlying PBC CIHR
Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.
How this classification was reachedexpand
Full frame machine prediction
Teacher imitationNot calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.
Distilled classifier scores by category (both heads)
| Category | Codex | Gemma |
|---|---|---|
| Metaresearch | 0.000 | 0.000 |
| Meta-epidemiology (narrow) | 0.000 | 0.000 |
| Meta-epidemiology (broad) | 0.000 | 0.000 |
| Bibliometrics | 0.000 | 0.000 |
| Science and technology studies | 0.000 | 0.000 |
| Scholarly communication | 0.000 | 0.000 |
| Open science | 0.000 | 0.000 |
| Research integrity | 0.000 | 0.000 |
| Insufficient payload (model declined to judge) | 0.001 | 0.000 |
Machine scores (provisional)
The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.
Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.
score_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from itClassification
machine, unvalidatedMachine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.
How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".