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Record W2792141816 · doi:10.1002/pep2.24051

Lipid membrane interactions of a fluorinated peptide with potential ion channel‐forming ability

2018· article· en· W2792141816 on OpenAlex

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

affAt least one author lists a Canadian institution in the pinned OpenAlex snapshot.
fundA Canadian funder is recorded on the work.

Bibliographic record

VenuePeptide Science · 2018
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicChemical Synthesis and Analysis
Canadian institutionsUniversité LavalPROTEO
FundersFonds de recherche du Québec – Nature et technologiesNatural Sciences and Engineering Research Council of Canada
KeywordsMembranePeptideChemistryNuclear magnetic resonance spectroscopyMolecular dynamicsSpectroscopyProtein secondary structureBiophysicsCrystallographyComputational chemistryStereochemistryBiochemistryBiology

Abstract

fetched live from OpenAlex

Abstract Fluorinated peptides attract much interest in the biomedical area because they generally exhibit an enhanced stability compared to their hydrogenated counterparts and because fluorine atoms represent efficient probes to investigate peptide assemblies, especially in membranes. We previously designed and characterized a fluorinated peptide intended to form ion channels in membranes. This peptide, designated as LX2, adopts a predominantly α‐helical structure and acts as a selective ion channel for various cations. Molecular dynamics indicated that the peptide tetrameric form would be favored. However, the interactions of LX2 with model membranes have not been studied experimentally. Here we investigated the interactions of LX2 and its acetylated form, Ac‐LX2, with eukaryotic model membranes using CD and infrared spectroscopy, as well as 19 F, 2 H, and 31 P NMR spectroscopy. 19 F NMR results indicate that the peptides undergo restrained motions in the presence of membranes, which strongly suggests their insertion in membranes. Both LX2 and Ac‐LX2 adopt a well‐defined α‐helical structure, in contrast with the secondary structure observed in hexafluoroisopropanol. The alterations of lipid organization due to LX2 peptides appear overall relatively small but the results suggest that the two peptides are located in the membrane hydrophobic core, LX2 being closer to the interfacial region than Ac‐LX2.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.003
Threshold uncertainty score0.314

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.001
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.008
GPT teacher head0.248
Teacher spread0.240 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it