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Record W2793648193 · doi:10.1371/journal.pntd.0006173

Paradoxical worsening of Emergomyces africanus infection in an HIV-infected male on itraconazole and antiretroviral therapy

2018· article· en· W2793648193 on OpenAlexaff
Kenneth Crombie, Zandile Spengane, Michael Locketz, Sipho Dlamini, Rannakoe Lehloenya, Sean Wasserman, Tsidiso G. Maphanga, Nelesh P. Govender, Chris Kenyon, Ilan S. Schwartz

Bibliographic record

VenuePLoS neglected tropical diseases · 2018
Typearticle
Languageen
FieldMedicine
TopicFungal Infections and Studies
Canadian institutionsUniversity of Manitoba
FundersVlaamse regeringFonds Wetenschappelijk Onderzoek
KeywordsItraconazoleAntiretroviral therapyHuman immunodeficiency virus (HIV)MedicineVirologyImmunologyAIDS-Related Opportunistic InfectionsAntifungalViral loadInternal medicineSidaViral diseaseDermatology

Abstract

fetched live from OpenAlex

A 42-year-old male from an urban informal settlement in Cape Town, South Africa, was seen at a tertiary-care hospital for progressively enlarging lesions on his nose. He had initially presented to medical care 6 months earlier with a 3-month history of anorexia, weight loss, nonproductive cough, and nasal congestion. An HIV test was reactive, and his CD4 count was 32 cells/L. He also had renal insufficiency with a creatinine clearance of 40 mL/min. Two weeks after diagnosis, he was initiated on antiretroviral therapy (ART) consisting of lamivudine (150 mg by mouth twice daily), stavudine (30 mg by mouth twice daily), and efavirenz (600 mg by mouth once daily). One week later, he developed widespread erythematous nodules and plaques on his face and a crusted mass on his nose (Fig 1A ). A chest X-ray demonstrated a reticular opacity within the right middle lobe. A skin biopsy of a facial plaque demonstrated a minimal inflammatory response (Fig Methenamine silver staining revealed small (3-5m) yeast-like cells with occasional narrow-based budding (Fig Fungal culture of skin tissue and blood grew Emergomyces africanus (formerly Emmonsia sp.); identification was confirmed by sequencing of the internal transcribed spacer region (ITS). He was treated with intravenous amphotericin B deoxycholate (1 mg/kg) for 14 days. Thereafter, his ART was changed to lamivudine (150 mg by mouth twice daily), zidovudine (300 mg by mouth twice daily), and combination lopinovir/ritonavir (400/100 mg by mouth twice daily), and he was commenced on itraconazole (200 mg capsule orally once daily, to be taken with food) to continue for 1 year pending immune reconstitution.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.059
Threshold uncertainty score0.592

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.027
GPT teacher head0.286
Teacher spread0.259 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations16
Published2018
Admission routes1
Has abstractyes

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