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Record W2793991061 · doi:10.1093/jcag/gwy009.091

A91 T CELL-SPECIFIC DELETION OF NOD2 DOES NOT INFLUENCE MICROBIAL RESILIENCE FOLLOWING ANTIBIOTIC EXPOSURE OR MUCOSAL DAMAGE

2018· article· en· W2793991061 on OpenAlexaffabout
K. Wayne Marshall, Ashleigh Goethel, Kenneth Croitoru

Bibliographic record

VenueJournal of the Canadian Association of Gastroenterology · 2018
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicGut microbiota and health
Canadian institutionsMount Sinai HospitalUniversity of Toronto
Fundersnot available
KeywordsNOD2DysbiosisBacteroidesImmune systemGut floraBiologyAntibioticsLactobacillus reuteriMicrobiologyImmunologyFirmicutesMicrobiomeLactobacillusClostridiaInnate immune systemBacteria

Abstract

fetched live from OpenAlex

The cause of inflammatory bowel disease (IBD) involves interactions between host genetics, the environment and the gut microbiota. Environmental perturbations, such as antibiotics, induce transient shifts in the microbiota, which may alter T cell-mediated immune responses. We previously found that Nod2 knockout mice show a delayed microbial recovery following antibiotic treatment, and that this altered microbiota influenced the response to T-cell induced mucosal damage in the small intestine. We sought to determine if deletion of Nod2 specifically in CD4+ T cells would play a role in antibiotic induced dysbiosis and resilience of the microbiota and whether this could lead to an altered immune response. Adult Nod2Flox and Nod2ΔCD4 mice received either control or amoxicillin [200 mg/L] ad libitum for one week, followed by control water for four weeks. Stool samples were collected weekly to monitor changes in the gut microbial community. On day 35, small intestinal mucosal damage was induced by an intraperitoneal injection of 50μg anti-CD3. On day 0, the gut microbiota of Nod2Flox and Nod2ΔCD4 littermates did not differ. Antibiotic treatment induced a reduction in the abundance of Firmicutes, including Lactobacillus and Clostridia, whereas Gamma-Proteobacteria and Bacteroidaceae increased compared to water-treated controls on day 7. Anti-CD3 injection induced mucosal damage resulting in increased levels of IFNγ and IL-17 in the small intestine, however there were no differences between genotypes or treatments. Myeloperoxidase, a measure of neutrophil activity, was significantly increased in Nod2Flox mice as compared to Nod2ΔCD4 littermates; however, this difference was ablated if the mice had previously received antibiotics. Our data indicates that while Nod2 is involved in microbial resilience and small intestinal mucosal damage, specific deletion of Nod2 in T cells does not recapitulate the phenotype. Together, this suggests that other (non-CD4+ T) cells are involved in the response to antibiotic-induced perturbations of the gut microbiota. Furthermore, altered microbial composition can influence neutrophil activity during mucosal damage in the small intestine. Department of Immunology, University of Toronto

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.004
Threshold uncertainty score0.014

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.001
Scholarly communication0.0010.000
Open science0.0000.000
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0040.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.005
GPT teacher head0.221
Teacher spread0.216 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2018
Admission routes2
Has abstractyes

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