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Record W2794137948 · doi:10.1093/jcag/gwy008.165

A164 RAPID INTRAHEPATIC AND PERIPHERAL BLOOD HCV RNA DECLINE AND HCV-SPECIFIC IMMUNE RESPONSE INCREASE DURING IFN-FREE DAA THERAPY IN HCV TREATMENT-NAÏVE PATIENTS

2018· article· en· W2794137948 on OpenAlexaff
Sonya A. MacParland, Vera Cherepanov, Leen Vijgen, Mohamed Gamil, Maria Beumont, Soocheol Yoon, Ashrafur Rahman, Camelia Capraru, Mario Ostrowski, Mayur Brahmania, David Wong, Richard Harrigan, Harry L.A. Janssen, Mark Sulkowski, Jordan J. Feld

Bibliographic record

VenueJournal of the Canadian Association of Gastroenterology · 2018
Typearticle
Languageen
FieldMedicine
TopicHepatitis C virus research
Canadian institutionsToronto Liver CentreMount Sinai HospitalUniversity of British ColumbiaUniversity Health NetworkUniversity of Toronto
Fundersnot available
KeywordsELISPOTPeripheral blood mononuclear cellMedicineHepatitis C virusVirologyImmune systemHepatitis CImmunologyNS3CD8BiologyVirus

Abstract

fetched live from OpenAlex

Interferon (IFN)-free HCV direct-acting antiviral (DAA) treatment regimens lead to rapid HCV RNA decline and high rates of sustained virologic response (SVR). This study examined the impact of IFN-free DAA treatment on HCV-specific T cell responses and immunophenotypic effects in peripheral blood and in the liver of patients. Nine treatment-naïve patients with HCV genotype 1 and fibrosis stage 0–2 (defined by FibroSure ≤0.48 and APRI score ≤1) were treated for 6 weeks with sofosbuvir (nucleotide polymerase inhibitor), simeprevir (NS3/4A protease inhibitor) and daclatasvir (NS5A inhibitor). Peripheral blood mononuclear cells (PBMC) and fine needle aspiration liver biopsies (FNAB) were collected at baseline, day 2, week 1, end of treatment (EOT) and post-treatment follow-up week 24. HCV RNA was quantitatively measured at all time points in plasma using the Roche Cobas Taqman HCV assay v2.0 (lower limit of quantification [LLOQ]=15 IU/mL) and in blood and liver samples using the Abbott RealTime HCV assay (LLOQ=12 IU/mL). HCV-specific immune responses were evaluated by Enzyme-Linked ImmunoSpot (ELISPOT) assay with pools of overlapping peptides spanning the HCV genome. Cell quantities available from FNAB samples for assessment of HCV-specific T cell responses were low. PBMC and intrahepatic T cell phenotype and exhaustion were evaluated by flow cytometry with markers for CD3, CD4, CD8, CD127, Tim-3 and PD-1. Plasma HCV RNA rapidly declined and was <15 IU/mL undetectable in all 9 patients at EOT. All 9 patients achieved SVR12 and SVR24. HCV RNA also declined in liver tissue but was still detected in all 9 patients at EOT (low-level detectable in all 9 patients,

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.001
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.001
Threshold uncertainty score0.003

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.001
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.011
GPT teacher head0.249
Teacher spread0.237 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations2
Published2018
Admission routes1
Has abstractyes

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