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Record W2794820515 · doi:10.1038/s42003-018-0013-y

Potential for re-emergence of wheat stem rust in the United Kingdom

2018· article· en· W2794820515 on OpenAlexfundno aff
Clare M. Lewis, Antoine Persoons, Daniel P. Bebber, Rose N. Kigathi, Jens Maintz, Kim Findlay, Vanessa Bueno-Sancho, Pilar Corredor‐Moreno, Sophie A. Harrington, Ngonidzashe Kangara, Anna Berlin, Richard L. Garcia, Silvia Germán, Alena Hanzalová, David Hodson, Mogens S. Hovmøller, Julio Huerta‐Espino, Muhammed Imtiaz, Javed Iqbal Mirza, Annemarie Fejer Justesen, R.E. Niks, Ali Omrani, Mehran Patpour, Z. A. Pretorius, Râmin Roohparvar, Hanan Sela, Ravi P. Singh, Brian J. Steffenson, Botma Visser, Paul Fenwick, Jane Thomas, Brande B. H. Wulff, Diane G. O. Saunders

Bibliographic record

VenueCommunications Biology · 2018
Typearticle
Languageen
FieldAgricultural and Biological Sciences
TopicBioenergy crop production and management
Canadian institutionsnot available
FundersBiotechnology and Biological Sciences Research CouncilAgriculture and Agri-Food CanadaHorizon 2020 Framework ProgrammeJohn Innes FoundationDirectorate for Biological SciencesU.S. Department of Agriculture
KeywordsStem rustKingdomRust (programming language)AgronomyBiologyBotanyComputer scienceResistance (ecology)

Abstract

fetched live from OpenAlex

Abstract Wheat stem rust, a devastating disease of wheat and barley caused by the fungal pathogen Puccinia graminis f. sp. tritici , was largely eradicated in Western Europe during the mid-to-late twentieth century. However, isolated outbreaks have occurred in recent years. Here we investigate whether a lack of resistance in modern European varieties, increased presence of its alternate host barberry and changes in climatic conditions could be facilitating its resurgence. We report the first wheat stem rust occurrence in the United Kingdom in nearly 60 years, with only 20% of UK wheat varieties resistant to this strain. Climate changes over the past 25 years also suggest increasingly conducive conditions for infection. Furthermore, we document the first occurrence in decades of P. graminis on barberry in the UK . Our data illustrate that wheat stem rust does occur in the UK and, when climatic conditions are conducive, could severely harm wheat and barley production.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.002
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.084
Threshold uncertainty score0.167

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0010.002
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.001
Science and technology studies0.0000.000
Scholarly communication0.0010.001
Open science0.0000.001
Research integrity0.0010.000
Insufficient payload (model declined to judge)0.0060.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.131
GPT teacher head0.326
Teacher spread0.195 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations140
Published2018
Admission routes1
Has abstractyes

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