Assessing the Gene Expression Changes in Oxidative Stress InducedBy BDE-99
Bibliographic record
Abstract
2,2,4,4,5-Pentabromo diphenyl ether (BDE-99), one of the polybrominated diphenyl ethers (PBDE) species are a commercially available chemical substance used as a flame retardant on a large scale.The use of BDE-99 on such a large scale provides further investigation of its effects on live mechanism due to this pollutant may be exposed to seafood, air, water, household wastes and household dust, as well as the most important exposure route is nutrition.Therefore we aim to investigate the gene expression changes of apoptotic and acute oxidative enzyme induced by BDE-99 in rat liver by qRT-PCR.Wistar albino rats, 250-300 g, were randomly divided into one control and two experimental groups (n=8 for each).0,05 mg/kg (dose I) and 0,1 mg/kg (dose II) BDE-99 (in corn oil) were administrated by gavage.10 µm thick sections of paraffin embedded liver tissue samples from harvested after ten days were used for total RNA isolation.The High Pure FFPET RNA Isolation Kit was used following the manufacturer's recommendations.Complementary DNA (cDNA) generated from extracted RNA samples using High-Capacity cDNA Reverse Transcription kit and random primers according to the kit protocol and 2µL of the reverse transcription reaction was subjected to Quantitative real-time PCR (qRT-PCR) amplification as a template.The cycling program consisted of an initial denaturation at 95°C for 10 min, followed by 50 cycles of 95°C for 15 s, 60°C for 1 min, 60°C for 1 min for all genes.Expression quantities of target genes were normalized using GAPDH as an internal gene.Changes in relative expression levels between control and experimental groups were evaluated for statistical significance according to Student-t test.The results were considered statistically significant in p<0.05.SOD expression levels increased significantly in dose I (2,2 fold) and II (2,91 fold) exposure groups but CAT and GSH levels only increased in dose II (1,9 and 2,08 fold respectively).Changes in SOD, CAT and GSH levels indicate that oxidative stress is induced by BDE-99.mRNA levels of HSP70 (2,08 and 6,04 fold), 34 and 20,28), Lamin (1,85 and 5,03 fold) were induced but NuMA levels remained in dose I and II.The increase in HSP70 level, an indicator of cellular stress, also parallels with oxidative stress parameters.Apaf-1 expression level was only increased in dose I (2,54 fold).The changes in expressions of Cas-9 and Apaf-I are also might consider as an evidence of BDE-99-induced cell apoptosis.Besides, it was determined that liver cells responded against nuclear stress by increasing lamin expression.In conclusion, we suggested that BDE-99 cause oxidative stress which leads to cellular apoptosis via increasing the expression levels of apoptotic genes in liver in rat.
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How this classification was reachedexpand
Full frame machine prediction
Teacher imitationNot calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.
Distilled classifier scores by category (both heads)
| Category | Codex | Gemma |
|---|---|---|
| Metaresearch | 0.000 | 0.000 |
| Meta-epidemiology (narrow) | 0.000 | 0.000 |
| Meta-epidemiology (broad) | 0.000 | 0.000 |
| Bibliometrics | 0.000 | 0.000 |
| Science and technology studies | 0.000 | 0.000 |
| Scholarly communication | 0.000 | 0.000 |
| Open science | 0.000 | 0.000 |
| Research integrity | 0.000 | 0.000 |
| Insufficient payload (model declined to judge) | 0.002 | 0.000 |
Machine scores (provisional)
The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.
Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.
score_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from itClassification
machine, unvalidatedMachine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.
How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".