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Record W2797088584 · doi:10.5539/jas.v10n5p13

Pathogenicity and Genetic Diversity of Fusarium oxysporum Causing Soybean Root Rot in Northeast China

2018· article· en· W2797088584 on OpenAlexvenueno aff
Yonggang Li, Tongxue Zhao, Gia Khuong Hoang Hua, Lankun Xu, Jinxin Liu, Shuxian Li, Hanwen Huang, Pingsheng Ji

Bibliographic record

VenueJournal of Agricultural Science · 2018
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicPlant Pathogens and Fungal Diseases
Canadian institutionsnot available
FundersU.S. Department of Agriculture
KeywordsBiologyFusarium oxysporumGenetic diversityRoot rotAmplified fragment length polymorphismUPGMAVeterinary medicineGenetic similarityFusariumPathogenicityPolymerase chain reactionHorticultureGenetic variationBotanyGeneMicrobiologyGeneticsPopulation

Abstract

fetched live from OpenAlex

Soybean is an important edible legume cultivated around the world. However, soybean production is seriously impacted by the widespread of root rot disease. In this study, genetic diversity and pathogenicity of Fusarium oxysporum associated with root rot of soybean in Heilongjiang province, China, were examined. A total of 50 F. oxysporum strains were isolated from diseased soybean plants grown in Harbin, Heihe, Jixi, Jiamusi and Qiqihar of Heilongjiang province. Pathogenicity study indicated that all F. oxysporum strains were able to induce root rot disease on soybean in which 28% of the isolates were highly aggressive, 42% were moderately aggressive, and 30% were weakly aggressive. Aggressiveness of the isolates did not appear to be associated with geographic location or plant age of isolation. Genomic DNA of the isolates was analyzed by polymerase chain reaction using eight amplified fragment length polymorphism (AFLP) primers that generated 1728 bands, of which 99% were polymorphic. Cluster analysis using UPGMA showed that the similarity values ranged from 0.15 to 0.47. At a similarity coefficient of 0.2, the isolates were separated into 7 groups. Analysis of molecular variance indicated that about 92% of the genetic variation resided within populations. No correlation was found between genetic diversity and aggressiveness or the geographic origin of the isolates. Results of the study indicate that pathogenic F. oxysporum are commonly associated with root rot of soybean with various aggressiveness and they are genetically diverse.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.032
Threshold uncertainty score0.064

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.001
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.007
GPT teacher head0.207
Teacher spread0.200 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations5
Published2018
Admission routes1
Has abstractyes

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