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Record W2799829821 · doi:10.1073/pnas.1721110115

Rewiring of auxin signaling under persistent shade

2018· article· en· W2799829821 on OpenAlex

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

fundA Canadian funder is recorded on the work.
no affNo Canadian affiliation: this work is invisible to an affiliation-only frame.
No Canadian affiliation. An affiliation-only frame, the usual design, would never have seen this work. It is one of the works that make the case for inverting the frame.

Bibliographic record

VenueProceedings of the National Academy of Sciences · 2018
Typearticle
Languageen
FieldAgricultural and Biological Sciences
TopicLight effects on plants
Canadian institutionsnot available
FundersInstitute of GeneticsAgencia Nacional de Promoción Científica y TecnológicaUniversity of California, San DiegoUniversidad de Buenos AiresUniversité de LausanneWageningen University and ResearchAlexander von Humboldt-Stiftung
KeywordsAuxinShade avoidanceArabidopsisBiologyPhytochromeCell biologyGene expressionArabidopsis thalianaSignal transductionBotanyGeneGeneticsRed lightMutant

Abstract

fetched live from OpenAlex

Significance In agricultural crops, plants are cultivated in close proximity, exposed to mutual shading. Photosensory receptors perceive this light environment and initiate growth responses that adjust the position of plant organs within the canopy to maximize light capture. During the early hours under shade, these responses are mediated by elevated levels of the hormone auxin. Here we show that under prolonged shade, the PHYTOCHROME INTERACTING FACTOR 4 light-signaling transcription factor, selected auxin receptors, their upstream regulatory miRNA, and downstream transcriptional regulators change their abundance to enhance growth responses, while auxin levels return to those observed before shade. Thus, in the presence of persistent shade, plants elicit a system-level rearrangement of auxin signaling, which sustains growth without increased auxin.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.118
Threshold uncertainty score0.266

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.001
Science and technology studies0.0000.001
Scholarly communication0.0000.000
Open science0.0010.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.066
GPT teacher head0.279
Teacher spread0.214 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it