NDM-1-producing Vibrio parahaemolyticus isolated from imported seafood
Bibliographic record
Abstract
Vibrio parahaemolyticus is a marine microorganism, frequently isolated from seafood, at water temperatures above 15 C. Symptoms are abdominal cramps, nausea, diarrhoea, fever, headache and chills. WT V. parahaemolyticus are characterized as being susceptible to all antibiotic classes, except penicillins. . parahaemolyticus strain 16-B3PA-006 was isolated in January 2016, from a shelled shrimp tail imported from Vietnam to France. Antimicrobial susceptibility was tested by the disc diffusion method (Bio-Rad, Marne-La-Coquette, France), following CLSI recommendations. The raw reads were trimmed (minimum length, 35 bp; quality score, 0.03) and assembled in CLC Genomics Workbench 7.5.1, firstly by mapping chromosome 1 and 2 from the V. parahaemolyticus reference genome (V. parahaemolyticus RIMD 2210633) and then de novo assembly of the remaining paired-end reads. A total of 190 contigs were obtained including 60 contigs that did not map the reference genome, indicating the presence of acquired genetic material. The Center for Genomic Epidemiology server (https://cge.cbs.dtu.dk/serv ices/) was used to identify acquired antimicrobial resistance genes (Resfinder), plasmid presence (PlasmidFinder) and ST (MLST).
Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.
How this classification was reachedexpand
Full frame distilled prediction
Teacher imitationNot calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.
Codex and Gemma teacher scores by category
| Category | Codex | Gemma |
|---|---|---|
| Metaresearch | 0.000 | 0.000 |
| Meta-epidemiology (narrow) | 0.001 | 0.001 |
| Meta-epidemiology (broad) | 0.001 | 0.001 |
| Bibliometrics | 0.000 | 0.000 |
| Science and technology studies | 0.000 | 0.000 |
| Scholarly communication | 0.000 | 0.000 |
| Open science | 0.001 | 0.000 |
| Research integrity | 0.001 | 0.001 |
| Insufficient payload (model declined to judge) | 0.000 | 0.000 |
Machine scores (provisional)
The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.
Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.
score_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from itClassification
machine, unvalidatedMachine predicted; a candidate call from one teacher head, not a consensus.
How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".