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Record W2804398725 · doi:10.1183/13993003.02133-2017

Optimising experimental research in respiratory diseases: an ERS statement

2018· article· en· W2804398725 on OpenAlexaff
Philippe Bonniaud, Aurélie Fabre, Nelly Frossard, Christophe Guignabert, Mark D. Inman, Wolfgang M. Kuebler, Tania Maes, Wei Shi, Martin R. Stämpfli, Stefan Uhlig, Eric S. White, Martin Witzenrath, Pierre‐Simon Bellaye, Bruno Crestani, Oliver Eickelberg, Heinz Fehrenbach, Andreas Günther, Gísli Jenkins, Guy Joos, A. Magnan, Bernard Maître, Ulrich A. Maus, Petra Reinhold, Juanita H. J. Vernooy, Luca Richeldi, Martin Kolb

Bibliographic record

VenueEuropean Respiratory Journal · 2018
Typearticle
Languageen
FieldMedicine
TopicViral gastroenteritis research and epidemiology
Canadian institutionsMcMaster University Medical CentreMcMaster UniversitySt. Joseph’s Healthcare HamiltonSt Joseph's Health Care
FundersOryzon GenomicsNational Institutes of HealthShionogiUniversiteit GentUniversité de StrasbourgAgence Nationale de la RechercheNational Centre for the Replacement, Refinement and Reduction of Animals in ResearchGalectoGilead SciencesFibroGenBundesministerium für Bildung und ForschungTeva Pharmaceutical IndustriesU.S. Department of DefenseSanofiMedical Research CouncilMorphoSysBiogenCelgeneAstraZenecaAustralian GovernmentPfizerDeutsche ForschungsgemeinschaftGlaxoSmithKline
KeywordsMedicineStatement (logic)Relevance (law)Perspective (graphical)Pulmonary hypertensionIntensive care medicineTask (project management)DiseaseLung diseaseTranslational researchAsthmaHuman lungLungEngineering ethicsPathologyImmunologyArtificial intelligenceComputer science

Abstract

fetched live from OpenAlex

Experimental models are critical for the understanding of lung health and disease and are indispensable for drug development. However, the pathogenetic and clinical relevance of the models is often unclear. Further, the use of animals in biomedical research is controversial from an ethical perspective. The objective of this task force was to issue a statement with research recommendations about lung disease models by facilitating in-depth discussions between respiratory scientists, and to provide an overview of the literature on the available models. Focus was put on their specific benefits and limitations. This will result in more efficient use of resources and greater reduction in the numbers of animals employed, thereby enhancing the ethical standards and translational capacity of experimental research. The task force statement addresses general issues of experimental research (ethics, species, sex, age, ex vivo and in vitro models, gene editing). The statement also includes research recommendations on modelling asthma, chronic obstructive pulmonary disease, pulmonary fibrosis, lung infections, acute lung injury and pulmonary hypertension. The task force stressed the importance of using multiple models to strengthen validity of results, the need to increase the availability of human tissues and the importance of standard operating procedures and data quality.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.009
metaresearch head score (Gemma)0.001
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.367
Threshold uncertainty score0.805

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0090.001
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.000
Science and technology studies0.0010.001
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.230
GPT teacher head0.478
Teacher spread0.248 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations94
Published2018
Admission routes1
Has abstractyes

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