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A Six-Gene Signature Predicts Clinical Outcome of Gastric Adenocarcinoma

2018· article· en· W2805839120 on OpenAlexaff
Yaqi Li, Qi Yu, Rui Zhu, Yi Wang, Jiarui Li, Qiang Wang, Wenna Guo, Shen Fu, Liucun Zhu

Bibliographic record

VenueCombinatorial Chemistry & High Throughput Screening · 2018
Typearticle
Languageen
FieldMedicine
TopicFerroptosis and cancer prognosis
Canadian institutionsSimon Fraser University
Fundersnot available
KeywordsProportional hazards modelUnivariateInternal medicineOncologyMultivariate statisticsBiomarkerMedicineSurvival analysisMultivariate analysisLogistic regressionMachine learningComputer scienceBiology

Abstract

fetched live from OpenAlex

BACKGROUND: The diverse anticancer measures display varied efficacy in different patients. Thus, appropriate therapy should be chosen for individual patients, and prognostic prediction, based on biomarkers, is a prerequisite for personalized therapy. OBJECTIVE: In this study, the prognostic model was established based on the genes that were significantly correlated with the survival time for patient death risk evaluation. METHOD: Univariate Cox proportional hazards regression analysis was utilized for screening the genes significantly correlated with the patients' survival time. Multivariate Cox proportional hazards regression analysis was utilized for establishing the model. Kaplan-Meier and ROC analyses were used for the validation of the prognostic prediction potential of the constructed model. RESULTS: ROC analysis was conducted in the training and validation datasets, and their AUROC values were 0.774 and 0.723, respectively. In comparison to the known prognostic biomarkers, our prognostic biomarker model constituted by the combination of 6 genes displayed superiority in prediction capability. CONCLUSIONS: These results indicated that our biomarker model could effectively stratify the risks in gastric adenocarcinoma patients with high prognostic prediction accuracy and sensitivity.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.001
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesMeta-epidemiology (narrow)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.615
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.001
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0000.001
Science and technology studies0.0000.001
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.045
GPT teacher head0.327
Teacher spread0.281 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations3
Published2018
Admission routes1
Has abstractyes

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