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Record W2808574250 · doi:10.13140/rg.2.1.3769.2406/1

EDDA Study Designs Taxonomy (version 2.0)

2016· article· en· W2808574250 on OpenAlexaboutno aff
Tanja Bekhuis, Eugene Tseytlin

Bibliographic record

VenueD-Scholarship@Pitt (University of Pittsburgh) · 2016
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicBiomedical Text Mining and Ontologies
Canadian institutionsnot available
Fundersnot available
KeywordsTerminologyTaxonomy (biology)PluralLibrary scienceSubject (documents)Computer scienceInformation retrievalLinguisticsPhilosophy

Abstract

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The EDDA Study Designs Taxonomy (v2.0) was developed by the Evidence in Documents, Discovery, and Analytics (EDDA) Group: Tanja Bekhuis (Principal Scientist); Eugene Tseytlin (Systems Developer); Ashleigh Faith (Taxonomist); Faina Linkov (Epidemiologist). This work was made possible, in part, by the US National Library of Medicine, National Institutes of Health, grant no. R00LM010943. Foundational research is described in Bekhuis T, Demner Fushman D, Crowley RS. Comparative effectiveness research designs: an analysis of terms and coverage in Medical Subject Headings (MeSH) and Emtree. Journal of the Medical Library Association (JMLA). 2013 April;101(2):92-100. PMC3634392. Coverage of the terminology appearing in JMLA was extended with terms from MeSH, NCI Thesaurus (NCI), Emtree, the HTA Database Canadian Repository [international repository for health technology assessment], and Robert Sandieson's synonym ring for research synthesis. Collected terms were enriched with terms from the NCI Metathesaurus. Variants include synonyms for preferred terms, singular and plural forms, and American and British spellings. Definitions, if they exist, are mainly from MeSH, NCI, Emtree, and medical dictionaries. The EDDA Study Designs Taxonomy by Tanja Bekhuis and Eugene Tseytlin is licensed under a Creative Commons Attribution–NonCommercial–ShareAlike 4.0 International License.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.105
metaresearch head score (Gemma)0.232
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesMetaresearch
Consensus categoriesnone
DomainCandidate signal: Methods · Consensus signal: none
Study designCandidate signal: Theoretical or conceptual · Consensus signal: none
GenreCandidate signal: Methods · Consensus signal: none
Teacher disagreement score0.895
Threshold uncertainty score0.553

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.1050.232
Meta-epidemiology (narrow)0.0020.005
Meta-epidemiology (broad)0.0050.009
Bibliometrics0.0240.025
Science and technology studies0.0020.002
Scholarly communication0.0070.006
Open science0.0050.007
Research integrity0.0030.007
Insufficient payload (model declined to judge)0.1100.023

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.051
GPT teacher head0.249
Teacher spread0.198 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

Study designTheoretical or conceptual
DomainMethods
GenreMethods

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

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Citations1
Published2016
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