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Record W2832150109 · doi:10.1101/365270

Effect of <i>PPARGC1A</i> Gly428Ser (rs8192678) polymorphism on athletic sports performance: A meta-analysis

2018· preprint· en· W2832150109 on OpenAlexaff
Phuntila Tharabenjasin, Noel Pabalan, Hamdi Jarjanazi

Bibliographic record

VenuebioRxiv (Cold Spring Harbor Laboratory) · 2018
Typepreprint
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicGenetics and Physical Performance
Canadian institutionsMinistry of the Environment, Conservation and Parks
Fundersnot available
KeywordsConfidence intervalMeta-analysisHomogeneousOdds ratioMedicineInternal medicineDemographyPolymorphism (computer science)AlleleGeneticsMathematicsBiologyGeneCombinatorics

Abstract

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Abstract Background Genetics plays a role in sports performance (SP) which, in this study, is measured by power and endurance activities as well as a mix between the two. However, variable results from genetic association studies warrant a meta-analysis to obtain more precise estimates of the association between PPARGC1A Gly482Ser polymorphism and SP. Methods Multi-database literature search yielded 14 articles (16 studies) for inclusion. Pooled odds ratios (ORs) and 95% confidence intervals (CI) were used in estimating associations. Summary effects were modified based on statistical power. Subgroups were SP (power, endurance and mixed) and race (Caucasians and Asians). Heterogeneity was assessed with the I 2 metric and its sources examined with outlier analysis. Results Gly allele effects significantly favoring SP (OR > 1.0, P < 0.05) form the core of our findings in: (i) the homogeneous overall effect at the post-modified, post-outlier level (OR 1.13, 95% CI 1.03-1.25, P = 0.01, I 2 = 0%); (ii) initially homogeneous power SP (ORs 1.22-1.25, 95% CI 1.05-1.44, P = 0.003-0.008, I 2 = 0%) which precluded outlier treatment; (iii) pre-outlier Caucasian outcomes (ORs 1.29-1.32, 95% CI 1.12-1.54, P = 0.0005) over that of Asians with a pooled null effect (OR 0.99, 95% CI 0.72-1.99, P = 0.53-0.92); (iv) homogeneous all > 80% (ORs 1.19-1.38, 95% CI 1.05-1.66, P = 0.0007-0.007, I 2 = 0%) on account of high statistical power (both study-specific and combined). In contrast, none of the Ser allele effects significantly favored SP and no Ser-Gly genotype outcome favored SP. The core significant outcomes were robust and comparisons subjected to publication bias test showed no evidence of it. Conclusion Lines of evidence show that the Gly allele effects favor SP. These were observed in the overall, Caucasians and statistically powered comparisons which exhibited consistent significance, stability, robustness, precision and lack of bias, all of which provide good evidence of associations between the Gly allele and SP. List of abbreviations A Asian ACE Angiotensin converting enzyme ACTN3 Alpha (α)-actinin 3 AM Analysis model ANOVA Analysis of variance df Degree of freedom ES Elevated significance C Caucasian CB Clark-Baudouin CI Confidence interval CID Confidence interval difference E Endurance EH Eliminated heterogeneity F Fixed-effects Fs Favoring SP Ds Disfavoring SP Gly Glycine GS Gain in significance Het Heterogeneity HWE Hardy-Weinberg Equilibrium I 2 Measure of variability expressed in % K Number designation of the study Li Lithuania Log OR Logarithm of OR M Mixed maf Minor allele frequency M-H Mantel-Haenszel

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.012
metaresearch head score (Gemma)0.017
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Meta-analysis · Consensus signal: Meta-analysis
GenreCandidate signal: Empirical · Consensus signal: none
Teacher disagreement score0.014
Threshold uncertainty score0.063

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0120.017
Meta-epidemiology (narrow)0.0040.002
Meta-epidemiology (broad)0.0140.057
Bibliometrics0.0050.006
Science and technology studies0.0010.001
Scholarly communication0.0030.001
Open science0.0020.001
Research integrity0.0020.002
Insufficient payload (model declined to judge)0.0040.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.012
GPT teacher head0.228
Teacher spread0.216 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designMeta-analysis
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

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Citations0
Published2018
Admission routes1
Has abstractyes

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