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Rapid, simple, column-free isolation of CD11b+ cells from various mouse organs (INC6P.323)

2015· article· en· W2885003837 on OpenAlexaff
Yanet Valdez, Nooshin Tabatabaei-Zavareh, Susan de Jong, Peter J. Morin, Evan Karas, Anita Kollar, Maureen Fairhurst, Allen Eaves, Terry E. Thomas

Bibliographic record

VenueThe Journal of Immunology · 2015
Typearticle
Languageen
FieldMedicine
TopicCell Adhesion Molecules Research
Canadian institutionsTerry Fox Research InstituteBC Cancer AgencyStemcell Technologies
Fundersnot available
KeywordsSpleenIntegrin alpha MImmune systemBiologyCell biologyBone marrowPhagocytosisImmunology

Abstract

fetched live from OpenAlex

Abstract CD11b+ cells are distributed throughout the body and act as sentinels for the immune system. The frequency of CD11b+ myeloid cells varies in different organs, ranging from approximately 48 % of the brain myeloid (microglia) cells, 30% of bone marrow and 6% of total nucleated cells in gut and spleen. The integrin CD11b heterodimerizes with CD18 to form the mature complex Mac-1. Mac-1 facilitates a variety of immune cell responses including phagocytosis, adhesion, migration and chemotaxis, all functions that are crucial for normal tissue homeostasis and inflammatory responses. CD11b+ cells are difficult and time consuming to isolate, due to their variable frequency using traditional methods. Here, we describe EasySepTM, a simple, column-free immunomagnetic method for the positive selection of highly purified CD11b+ cells from brain, bone marrow, spleen and gut. Labelled CD11b+ cells are retained in a tube in an EasySepTM magnet while unwanted cells are poured off. Selection can be fully automated using RoboSepTM. Starting with a frequency of 7.6 ± 1.3 % CD11b+ cells in spleen, purities of 93.9 ± 4.5 % (n=41) were achieved. Fully competent cells, as shown by functional assays (phagocytosis, ROS), were isolated from the above tissues. This EasySepTM technology provides a fast and simple method to access highly purified functional CD11b+ cells from a variety of tissues, facilitating their study ex-vivo.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Methods · Consensus signal: none
Teacher disagreement score0.005
Threshold uncertainty score0.015

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0010.000
Meta-epidemiology (narrow)0.0010.001
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0010.000
Science and technology studies0.0010.000
Scholarly communication0.0010.000
Open science0.0010.001
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0050.007

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.028
GPT teacher head0.279
Teacher spread0.251 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreMethods

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

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Citations0
Published2015
Admission routes1
Has abstractyes

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