MétaCan
Menu
Back to cohort
Record W2885268399

Understanding Gene Panel Testing for Breast Cancer Risk

2018· article· en· W2885268399 on OpenAlexaboutno aff
Angelina Tryon, Gord Glendon

Bibliographic record

VenueDigital Commons-Sarah Lawrence (Sarah Lawrence College) · 2018
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicNutrition, Genetics, and Disease
Canadian institutionsnot available
Fundersnot available
KeywordsBreast cancerCancerMedicineOncologyInternal medicine
DOInot available

Abstract

fetched live from OpenAlex

Polygenic tests such as genome-wide small nucleotide polymorphism (SNP) risk testing, exome or genome sequencing are currently on the horizon for genetic testing for inherited cancer risk. We are unsure of how patients would accept this future genetic testing and the best way to fully understand the experience of undergoing a polygenic test for breast cancer risk is to explore the experience of women who have already undergone the process. In Ontario, these individuals are those who have already had gene panel testing (GPT). This group’s opinions and experiences will be directly related to the refinement and modification of the existing GPT process and will provide guidance for polygenic testing offered in the future. Methods: Fourteen women who have undergone GPT in the past year were interviewed in a semi-structured manner regarding their GPT experience. Interviews were recorded and transcribed, then qualitatively coded to identify key words, phrases, and expressed concepts surrounding GPT. Results: Participants had an overall favourable opinion regarding their GPT experience, with minor changes to be considered in future provision of GPT. In general, GPT appears to be well-tolerated within the context of a traditional genetics assessment and participants that did not receive a clinically significant result through GPT felt that they would be open to pursuing other forms of genetic testing in the future such as polygenic testing, despite the possibility of receiving an uncertain result.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesMeta-epidemiology (narrow)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.478
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0010.001
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.001
Science and technology studies0.0010.001
Scholarly communication0.0000.000
Open science0.0010.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.080
GPT teacher head0.280
Teacher spread0.201 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2018
Admission routes1
Has abstractyes

Explore more

Same venueDigital Commons-Sarah Lawrence (Sarah Lawrence College)Same topicNutrition, Genetics, and DiseaseFrench-language works237,207