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Record W2886523444 · doi:10.1101/383331

The genetics of the mood disorder spectrum: genome-wide association analyses of over 185,000 cases and 439,000 controls

2018· preprint· en· W2886523444 on OpenAlexfundno aff
Jonathan R. I. Coleman, Héléna A. Gaspar, Julien Bryois, Gerome Breen

Bibliographic record

VenuebioRxiv (Cold Spring Harbor Laboratory) · 2018
Typepreprint
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicGenetic Associations and Epidemiology
Canadian institutionsnot available
FundersNational Institute of Mental HealthNational Health and Medical Research CouncilStanley Center for Psychiatric Research, Broad InstituteUniversity of California, San DiegoNational Institutes of HealthMinistry of Cultural AffairsH. Lundbeck A/SMedical Research CouncilSiemens HealthineersChinese Society of Clinical OncologyNovo Nordisk FondenNSW Ministry of HealthVetenskapsrådetRegion HovedstadenNovo NordiskEuropean Regional Development FundKing's College LondonMax-Planck-GesellschaftCenter for Individualized Medicine, Mayo ClinicDeutsche ForschungsgemeinschaftNederlandse Organisatie voor Wetenschappelijk OnderzoekGeneralitat de CatalunyaStanley Medical Research InstituteBundesministerium für Bildung und ForschungSchweizerischer Nationalfonds zur Förderung der Wissenschaftlichen ForschungUniversität GreifswaldAgence Nationale de la RechercheCanadian Institutes of Health ResearchOffice of Health and Medical ResearchRheinische Friedrich-Wilhelms-Universität BonnScottish Funding CouncilEuropean CommissionBroad InstituteQIMR Berghofer Medical Research InstituteNorges ForskningsrådErasmus Medisch CentrumStiftelsen för Strategisk ForskningNeuroscience Research AustraliaWellcome TrustKarolinska InstitutetZonMwNational Alliance for Research on Schizophrenia and DepressionNational Institute on Drug AbuseSouth London and Maudsley NHS Foundation TrustNational Institute on Alcohol Abuse and AlcoholismStockholms Läns LandstingHøjteknologifondenLundbeckfondenState University of New YorkKaiser PermanenteInstituto de Salud Carlos IIIEllison Medical FoundationU.S. Department of Health and Human ServicesMayo ClinicGlaxoSmithKlineAgència de Gestió d'Ajuts Universitaris i de RecercaNational Institute for Health and Care ResearchWayne and Gladys Valley FoundationDepartament de Salut, Generalitat de CatalunyaNational Science FoundationUniversity of MichiganCilagRobert Wood Johnson FoundationPfizerWestfälische Wilhelms-Universität MünsterNational Institute on AgingMinisterio de Asuntos Económicos y Transformación Digital, Gobierno de España
KeywordsBipolar disorderMajor depressive disorderMood disordersGenome-wide association studyMoodDepression (economics)PsychiatryGenetic associationPsychologyBipolar II disorderClinical psychologyGeneticsGenotypeBiologySingle-nucleotide polymorphismAnxietyGene

Abstract

fetched live from OpenAlex

Abstract Background Mood disorders (including major depressive disorder and bipolar disorder) affect 10-20% of the population. They range from brief, mild episodes to severe, incapacitating conditions that markedly impact lives. Despite their diagnostic distinction, multiple approaches have shown considerable sharing of risk factors across the mood disorders. Methods To clarify their shared molecular genetic basis, and to highlight disorder-specific associations, we meta-analysed data from the latest Psychiatric Genomics Consortium (PGC) genome-wide association studies of major depression (including data from 23andMe) and bipolar disorder, and an additional major depressive disorder cohort from UK Biobank (total: 185,285 cases, 439,741 controls; non-overlapping N = 609,424). Results Seventy-three loci reached genome-wide significance in the meta-analysis, including 15 that are novel for mood disorders. More genome-wide significant loci from the PGC analysis of major depression than bipolar disorder reached genome-wide significance. Genetic correlations revealed that type 2 bipolar disorder correlates strongly with recurrent and single episode major depressive disorder. Systems biology analyses highlight both similarities and differences between the mood disorders, particularly in the mouse brain cell types implicated by the expression patterns of associated genes. The mood disorders also differ in their genetic correlation with educational attainment – positive in bipolar disorder but negative in major depressive disorder. Conclusions The mood disorders share several genetic associations, and can be combined effectively to increase variant discovery. However, we demonstrate several differences between these disorders. Analysing subtypes of major depressive disorder and bipolar disorder provides evidence for a genetic mood disorders spectrum.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.003
metaresearch head score (Gemma)0.005
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.014
Threshold uncertainty score0.028

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0030.005
Meta-epidemiology (narrow)0.0000.001
Meta-epidemiology (broad)0.0010.002
Bibliometrics0.0020.003
Science and technology studies0.0010.000
Scholarly communication0.0010.000
Open science0.0010.001
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0020.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.013
GPT teacher head0.251
Teacher spread0.238 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations11
Published2018
Admission routes1
Has abstractyes

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Same venuebioRxiv (Cold Spring Harbor Laboratory)→Same topicGenetic Associations and Epidemiology→French-language works237,207→