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Record W2889170712 · doi:10.1111/pce.13432

A glycoform of the secreted purple acid phosphatase <scp>AtPAP26</scp> co‐purifies with a mannose‐binding lectin (<scp>AtGAL1</scp>) upregulated by phosphate‐starved <i>Arabidopsis</i>

2018· article· en· W2889170712 on OpenAlexafffund
Mina Ghahremani, Hue Tran, Sanaz G. Biglou, Bryden O’Gallagher, Yi‐Min She, William C. Plaxton

Bibliographic record

VenuePlant Cell & Environment · 2018
Typearticle
Languageen
FieldAgricultural and Biological Sciences
TopicPolysaccharides and Plant Cell Walls
Canadian institutionsHealth CanadaOncolytics Biotech (Canada)Queen's University
FundersNatural Sciences and Engineering Research Council of Canada
KeywordsArabidopsisBiochemistryLectinMannosePhosphataseGlycanArabidopsis thalianaAgglutininMutantBiologyChemistryGlycoproteinMolecular biologyEnzymeGene

Abstract

fetched live from OpenAlex

Abstract The purple acid phosphatase AtPAP26 plays a central role in Pi‐scavenging by Pi‐starved (−Pi) Arabidopsis . Mass spectrometry (MS) of AtPAP26‐S1 and AtPAP26‐S2 glycoforms secreted by −Pi suspension cells demonstrated that N‐glycans at Asn 365 and Asn 422 were modified in AtPAP26‐S2 to form high‐mannose glycans. A 55‐kDa protein that co‐purified with AtPAP26‐S2 was identified as a Galanthus nivalis agglutinin‐related and apple domain lectin‐1 (AtGAL1; At1g78850). MS revealed that AtGAL1 was bisphosphorylated at Tyr 38 and Thr 39 and glycosylated at four conserved Asn residues. When AtGAL was incubated in the presence of a thiol‐reducing reagent prior to immunoblotting, its cross‐reactivity with anti‐AtGAL1‐IgG was markedly attenuated (consistent with three predicted disulfide bonds in AtGAL1's apple domain). Secreted AtGAL1 polypeptides were upregulated to a far greater extent than AtGAL1 transcripts during Pi deprivation, indicating posttranscriptional control of AtGAL1 expression. Growth of a −Pi atgal1 mutant was unaffected, possibly due to compensation by AtGAL1's closest paralog, AtGAL2 (At1g78860). Nevertheless, AtGAL1 's induction by numerous stresses combined with the broad distribution of AtGAL1‐like lectins in diverse species implies an important function for AtGAL1 orthologs within the plant kingdom. We hypothesize that binding of AtPAP26‐S2's high‐mannose glycans by AtGAL1 enhances AtPAP26 function to facilitate Pi‐scavenging by −Pi Arabidopsis .

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.216
Threshold uncertainty score0.939

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0000.000
Science and technology studies0.0010.000
Scholarly communication0.0000.000
Open science0.0010.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.008
GPT teacher head0.164
Teacher spread0.157 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations19
Published2018
Admission routes2
Has abstractyes

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