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Record W2889486741 · doi:10.1101/403733

<i>Zfp189</i> Mediates Stress Resilience Through a CREB-Regulated Transcriptional Network in Prefrontal Cortex

2018· preprint· en· W2889486741 on OpenAlexaff
Zachary S. Lorsch, Peter J. Hamilton, Aarthi Ramakrishnan, Eric M. Parise, William J. Wright, Marine Salery, Ashley E. Lepack, Philipp Mews, Orna Issler, Andrew McKenzie, Xianxiao Zhou, Lyonna F. Parise, Stephen T. Pirpinias, Idelisse Ortiz Torres, Sarah Montgomery, Yong‐Hwee Eddie Loh, Benoît Labonté, Andrew P. Conkey, Ann E. Symonds, Rachael L. Neve, Gustavo Turecki, Ian Maze, Yan Dong, Bin Zhang, Li Shen, Rosemary C. Bagot, Eric J. Nestler

Bibliographic record

VenuebioRxiv (Cold Spring Harbor Laboratory) · 2018
Typepreprint
Languageen
FieldNeuroscience
TopicNuclear Receptors and Signaling
Canadian institutionsMcGill UniversityDouglas Mental Health University InstituteUniversité Laval
FundersNational Institutes of HealthHope for Depression Research Foundation
KeywordsCREBRegulatorNeurosciencePrefrontal cortexBiologyTranscriptional regulationTranscriptomeReprogrammingRegulation of gene expressionCell biologyGene expressionTranscription factorGeneGenetics

Abstract

fetched live from OpenAlex

Summary Stress resilience involves numerous brain-wide transcriptional changes. Determining the organization and orchestration of these transcriptional events may reveal novel antidepressant targets, but this remains unexplored. Here, we characterize the resilient transcriptome with co-expression analysis and identify a single transcriptionally-active uniquely-resilient gene network. Zfp189 , a previously unstudied zinc finger protein, is the top network key driver and its overexpression in prefrontal cortical (PFC) neurons preferentially activates this network, alters neuronal activity and promotes behavioral resilience. CREB, which binds Zfp189 , is the top upstream regulator of this network. To probe CREB- Zfp189 interactions as a network regulatory mechanism, we employ CRISPR-mediated locus-specific transcriptional reprogramming to direct CREB selectively to the Zfp189 promoter. This single molecular interaction in PFC neurons recapitulates the pro-resilient Zfp189- dependent downstream effects on gene network activity, electrophysiology and behavior. These findings reveal an essential role for Zfp189 and a CREB- Zfp189 regulatory axis in mediating a central transcriptional network of resilience.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesMeta-epidemiology (narrow)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.164
Threshold uncertainty score0.999

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.000
Meta-epidemiology (narrow)0.0010.001
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0000.001
Science and technology studies0.0000.001
Scholarly communication0.0000.000
Open science0.0010.001
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.018
GPT teacher head0.226
Teacher spread0.208 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations3
Published2018
Admission routes1
Has abstractyes

Explore more

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