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Record W2891402235 · doi:10.1038/s41426-018-0156-4

Nonhuman primates across sub-Saharan Africa are infected with the yaws bacterium <i>Treponema pallidum</i> subsp. <i>pertenue</i>

2018· letter· en· W2891402235 on OpenAlexaff
Sascha Knauf, Jan F. Gogarten, Verena J. Schuenemann, Hélène De Nys, Ariane Düx, Michal Strouhal, Lenka Mikalová, Kirsten I. Bos, Roy A. Armstrong, E. K. Batamuzi, Idrissa S. Chuma, Bernard Davoust, Georges Diatta, Robert Fyumagwa, Reuben R. Kazwala, Julius D. Keyyu, Inyasi A. V. Lejora, Anthony Levasseur, Hsi Liu, M. A. Mayhew, Oleg Mediannikov, Didier Raoult, Roman M. Wittig, Christian Roos, Fabian H. Leendertz, David Šmajs, Kay Nieselt, Johannes Krause, Sébastien Calvignac‐Spencer

Bibliographic record

VenueEmerging Microbes & Infections · 2018
Typeletter
Languageen
FieldMedicine
TopicSyphilis Diagnosis and Treatment
Canadian institutionsMcGill University
FundersGrantová Agentura České RepublikyDeutsche ForschungsgemeinschaftAgence Nationale de la RechercheDeutscher Akademischer AustauschdienstEuropean Research CouncilNational Science Foundation
KeywordsTreponemaSyphilisBiologyTreponematosisVirologyGeographySexually transmitted diseaseHuman immunodeficiency virus (HIV)

Abstract

fetched live from OpenAlex

Dear Editor,The bacterium Treponema pallidum (TP) causes human syphilis (subsp. pallidum; TPA), bejel (subsp. endemicum; TEN), and yaws (subsp. pertenue; TPE)1. Although syphilis has reached a worl...

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.002
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: none
Teacher disagreement score0.008
Threshold uncertainty score0.028

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.002
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0020.001
Scholarly communication0.0010.001
Open science0.0000.001
Research integrity0.0060.005
Insufficient payload (model declined to judge)0.0080.006

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.017
GPT teacher head0.257
Teacher spread0.239 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations61
Published2018
Admission routes1
Has abstractyes

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