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Record W2891752203 · doi:10.3389/fmicb.2018.01990

Bacterial Subspecies Variation and Nematode Grazing Change P Dynamics in the Wheat Rhizosphere

2018· article· en· W2891752203 on OpenAlexafffundabout
Usman Irshad, Étienne Yergeau

Bibliographic record

VenueFrontiers in Microbiology · 2018
Typearticle
Languageen
FieldAgricultural and Biological Sciences
TopicNematode management and characterization studies
Canadian institutionsInstitut National de la Recherche Scientifique
FundersNatural Sciences and Engineering Research Council of Canada
KeywordsRhizosphereBiologyRhizobacteriaPseudomonasGrazingMicrocosmPhosphorusTrophic levelAbundance (ecology)BacteriaAgronomyBotanyEcologyChemistry

Abstract

fetched live from OpenAlex

Low phosphorus soils are thought to constitute the majority of soils worldwide and cannot support intensive agriculture without high fertilizer inputs. Rhizospheric Rhizobacteria are well-known to modify P dynamics, and an increased bacterial diversity normally has a positive impact on process rate. However, it is not well known how variation in bacterial diversity at the subspecies level could influence trophic interactions in the rhizosphere and its consequences on plant P nutrition. We therefore hypothesized that the interactions between closely related P solubilizing bacteria and their grazing nematodes could improve plant P dynamics from an unavailable P source. We isolated four Pseudomonas poae strains and extracted nematodes from a Saskatchewan wheat field soil sample. The potential of all bacterial isolates and with and without nematodes combinations for increasing P availability in the wheat rhizosphere was tested in controlled microcosms with Ca3(PO4)2 as sole P source. Liberated P, phosphatase activity, plant P and bacterial abundance based upon phnX gene copies were determined. Phosphorus solubilization efficiency of isolates varied as P. poae 1 >P. poae 2 > P. poae 3 > P. poae 4, respectively whereas phosphatase enzyme activity was only detected under nematodes grazing and during the first 15 days of the experiment. Nematodes grazing upon individual Pseudomonas poae increased phosphatase enzyme activity, bacterial abundance, but decreased plant P concentration compared to non-grazed system. In contrast, the treatment combining all Pseudomonas poae isolates together with nematodes resulted in significant increases in P availability and plant P concentration. Diverse P-solubilizing efficiency and interaction with nematodes within the same bacterial “species” suggest that P dynamics might be linked to micro variation in soil diversity that would not accurately be picked up using common tools such as 16S rRNA gene sequencing.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.224
Threshold uncertainty score0.373

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.015
GPT teacher head0.202
Teacher spread0.186 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations22
Published2018
Admission routes3
Has abstractyes

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