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Abstract 15465: Precision Medicine Approach to Resistant Hypertension: Genetic Markers of Resistant Hypertension Through a Genome-wide Association Study (GWAS) in the Secondary Prevention of Subcortical Strokes (SPS3)

2015· article· en· W2893677234 on OpenAlexaff
Nihal El Rouby, Caitrin W. McDonough, Yan Gong, Leslie A. McClure, Braxton D. Mitchell, Richard B. Horenstein, Robert L. Talbert, Atsushi Takahashi, Toshihiro Tanaka, Michiaki Kubo, Carl J. Pepine, Rhonda M. Cooper‐DeHoff, Oscar Benavente, Alan R. Shuldiner, Julie A. Johnson

Bibliographic record

VenueCirculation · 2015
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicNutrition, Genetics, and Disease
Canadian institutionsUniversity of British Columbia
Fundersnot available
KeywordsMedicineGenome-wide association studySingle-nucleotide polymorphismInternal medicineGenetic associationBioinformaticsOncologyGeneticsGenotypeGeneBiology

Abstract

fetched live from OpenAlex

Introduction: Resistant hypertension (RHTN), a blood pressure (BP) ≥140/90 mm Hg despite ≥ 3 antihypertensive drugs or BP < 140/90 mm Hg using ≥ 4 drugs, is associated with increased incidence of adverse cardiovascular outcomes, especially stroke. Hypothesis and objective: We hypothesize common variants exist in the genes regulating BP response and may lead to RHTN in some patients. Methods: A discovery cohort of hypertensive participants were included as cases (as defined above) or controls (N=719; 263 whites, 322 Hispanics, and 134 African Americans) from SPS3-GENES. They were genotyped on the Illumina Omni 5 Exome chip. Multiple logistic regression analysis was conducted separately in each race using an additive genetic model, adjusting for predictors for RHTN, principle components for ancestry and BP target treatment arms. Results from the 3 racial groups were combined using meta-analysis with inverse-variance weighting, with the hypothesis that functional variants are consistent across races. The associations of seven SNPs that met the suggestive level of association (p <1 x10-5) in the SPS3 meta-analysis were tested for replication in 1,194 participants (657 whites, and 537 Hispanics) from the INternational VErapamil-SR trandolapril STudy GENEtic Substudy (INVEST-GENES). Bonferroni adjusted p was set at 0.007 to correct for multiple comparisons. Combined meta-analysis between INVEST and SPS3 was conducted for replicated SNPs or SNPs that had consistent association in the two cohorts with a nominal significance. Results: A missense SNP (rs3766160; Asp114Asn) in CELA2B was associated with increased risk of RHTN in SPS3 (Combined OR=1.8, p=6x10-6)). The same SNP replicated in INVEST (Combined OR=1.3, p=0.004; INVEST/SPS3 meta-p=4.5x10-7). An intronic SNP rs3789592 in strong linkage disequilibrium (r2=0.98) with a missense SNP (rs1049434; Asp490Glu) in SLC16A1 was associated with RHTN in SPS3 (Combined OR=2.0, p=7.6x10-7) and had a consistent association in INVEST (Combined OR=1.2, p=0.048; INVEST/SPS3 meta-p=7.6x10-7). Conclusion: Genetic loci in CELA2B, SLC16A1 were identified and confirmed for association in two cohorts. These associations, if further validated may help identify those patients at risk for RHTN.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.005
metaresearch head score (Gemma)0.007
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.005
Threshold uncertainty score0.026

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0050.007
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0010.003
Bibliometrics0.0010.002
Science and technology studies0.0010.000
Scholarly communication0.0010.000
Open science0.0010.001
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0040.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.037
GPT teacher head0.269
Teacher spread0.233 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

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Citations0
Published2015
Admission routes1
Has abstractyes

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