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Record W2896689037 · doi:10.1371/journal.pgen.1007643

Identification of UHRF2 as a novel DNA interstrand crosslink sensor protein

2018· article· en· W2896689037 on OpenAlexfundno aff
Anna Motnenko, Chih‐Chao Liang, Di Yang, David López Martínez, Yasunaga Yoshikawa, Bao Zhan, Katherine E. Ward, Jiayang Tian, Wilhelm Haas, Paolo Spingardi, Benedikt M. Kessler, Skirmantas Kriaučionis, Steven P. Gygi, Martin A. Cohn

Bibliographic record

VenuePLoS Genetics · 2018
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicDNA Repair Mechanisms
Canadian institutionsnot available
FundersJohn Fell Fund, University of OxfordJapan Society for the Promotion of ScienceBiotechnology and Biological Sciences Research CouncilLudwig Institute for Cancer ResearchNatural Sciences and Engineering Research Council of CanadaFundación Mutua MadrileñaCancer Research UKWellcome TrustMedical Research CouncilRoyal SocietyWellcome
KeywordsBiologyFANCD2ChromatinDNAGeneticsMolecular biologyCell biologyDNA repairFanconi anemia

Abstract

fetched live from OpenAlex

The Fanconi Anemia (FA) pathway is important for repairing interstrand crosslinks (ICLs) between the Watson-Crick strands of the DNA double helix.An initial and essential stage in the repair process is the detection of the ICL.Here, we report the identification of UHRF2, a paralogue of UHRF1, as an ICL sensor protein.UHRF2 is recruited to ICLs in the genome within seconds of their appearance.We show that UHRF2 cooperates with UHRF1, to ensure recruitment of FANCD2 to ICLs.A direct protein-protein interaction is formed between UHRF1 and UHRF2, and between either UHRF1 and UHRF2, and FANCD2.Importantly, we demonstrate that the essential monoubiquitination of FANCD2 is stimulated by UHRF1/UHRF2.The stimulation is mediating by a retention of FANCD2 on chromatin, allowing for its monoubiquitination by the FA core complex.Taken together, we uncover a mechanism of ICL sensing by UHRF2, leading to FANCD2 recruitment and retention at ICLs, in turn facilitating activation of FANCD2 by monoubiquitination. Author summaryFanconi Anemia is a genetic disease where patients typically have congenital abnormalities, develop bone marrow failure and suffer from cancer predisposition.The cells in patients have a reduced ability to repair a type of DNA damage where the two strands of the DNA double helix are physically linked together, and this failure in repair is believed to contribute to cause of the disease.Many proteins are involved in repairing this type of DNA damage in healthy individuals, via a complex DNA repair pathway called the Fanconi Anemia pathway.Here, we report the identification of a new player in this pathway.The protein, called UHRF2, is able to sense the DNA damage in the genome, and thereby help to initiate the healthy repair of the damage.In addition to improving our molecular

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.001
Threshold uncertainty score0.003

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0010.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.015
GPT teacher head0.257
Teacher spread0.242 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations21
Published2018
Admission routes1
Has abstractyes

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