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Record W2897967274 · doi:10.1016/j.jalz.2018.06.428

P1‐419: USING A BRAIN NETWORK APPROACH TO PREDICT GENETIC MUTATION IN INDIVIDUAL PATIENTS WITH FAMILIAL FRONTOTEMPORAL DEMENTIA

2018· article· en· W2897967274 on OpenAlexaff
Alexandra Touroutoglou, Michael Brickhouse, Samantha Krivensky, Bonnie Wong, Katelynn Getchell, Diane Lucente, Scott M. McGinnis, Brad C. Dickerson, Bradley F. Boeve, Howard J. Rosen, Adam L. Boxer, Jessica Bove, Danielle Brushaber, Giovanni Coppola, Christina Dheel, Susan Dickinson, Kelley Faber, Julie A. Fields, Jamie Fong, Tatiana Foroud, Leah K. Forsberg, Ralitza H. Gavrilova, Debra Gearhart, Nupur Ghoshal, Jill Goldman, Jonathan Graff‐Radford, Neill R. Graff‐Radford, Murray Grossman, Dana Haley, Hilary W. Heuer, John Hsiao, Edward D. Huey, David J. Irwin, David T. Jones, Lynne C. Jones, Kejal Kantarci, Anna M. Karydas, David S. Knopman, John Kornak, Joel H. Kramer, Walter K. Kremers, Walter A. Kukull, Maria I. Lapid, Ian R. Mackenzie, Masood Manoochehri, Bruce L. Miller, Rodney Pearlman, Madeline Potter, Rosa Rademakers, Katherine Rankin, Katya Rascovsky, Pheth Sengdy, Leslie M. Shaw, Margaret Sutherland, Jeremy A. Syrjanen, Nadine Tatton, Joanne Taylor, Arthur W. Toga, John Q. Trojanowski, Sandra Weıntraub, Zbigniew K. Wszołek

Bibliographic record

VenueAlzheimer s & Dementia · 2018
Typearticle
Languageen
FieldMedicine
TopicAmyotrophic Lateral Sclerosis Research
Canadian institutionsUniversity of British Columbia
Fundersnot available
KeywordsC9orf72Frontotemporal dementiaAtrophyPsychologyFrontotemporal lobar degenerationDementiaNeuroscienceMedicinePathologyDisease

Abstract

fetched live from OpenAlex

Improving clinicians’ ability to predict genetic mutations causing Frontotemporal dementia (FTD) is useful for diagnostic evaluation and potentially referral to appropriate studies including therapeutic trials. Previous studies have shown neuroanatomical differences between the three main genetic mutations in familial FTD, microtubule-associated protein tau (MAPT), chromosome 9 open reading frame 72 (c9orf72) and progranulin (GRN) mutations. MAPT has been associated with atrophy predominantly in the anteromedial temporal lobes; c9orf72 with widespread atrophy in frontoparietal regions; and GRN with asymmetrical atrophy in frontotemporoparietal regions (Whitwell et al., 2012; Rohrer et al., 2010). Using a brain network approach, the main goal of this study was to assess whether different patterns of atrophy in large-scale brain networks identified in prior work (Seeley et al., 2012; Touroutoglou et al., 2012; Vincent et al., 2008) predict genetic mutations in FTD patients spanning different clinical diagnoses. We hypothesized that (1) relatively greater atrophy in the salience and semantic appraisal networks, including frontoinsula and anterior temporal regions would be present in MAPT, (2) relatively greater atrophy in the frontoparietal network would be associated with c9orf72 and (3) relatively greater asymmetrical atrophy in frontoparietal and salience networks would be associated with GRN. The analysis included symptomatic participants recruited from the Longitudinal Evaluation of Familial Frontotemporal Dementia Study (LEFFTDS). To determine network-based patterns of brain atrophy at the individual level, we used single-subject general linear model analysis and compared structural MRI data from healthy controls (N = 166) versus MAPT (N = 18), c9orf72 (N = 27), and GRN (N= 10) mutation patients. Cortical thickness measurements were calculated using FreeSurfer v6.0. An untrained rater predicted gene mutations based on the patterns of brain network atrophy. Prediction accuracy was measured with the percentage of correct predictions. The results showed 74% prediction accuracy for MAPT, 72% prediction accuracy for c9orf72 and 60% prediction accuracy for GRN. Our findings provide preliminary evidence suggesting that a brain network approach can be useful in individual patients to predict the specific genetic mutations in the three major genetic variants of familial FTD.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.003
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.009
Threshold uncertainty score0.017

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0010.003
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0020.001
Science and technology studies0.0010.000
Scholarly communication0.0010.001
Open science0.0000.001
Research integrity0.0010.000
Insufficient payload (model declined to judge)0.0030.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.044
GPT teacher head0.291
Teacher spread0.246 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2018
Admission routes1
Has abstractyes

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