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Record W2899104725

Hypoxia Promotes Stem Cell Phenotypes, Resistance to Therapy and Poor Prognosis through Epigenetic Regulation of DICER

2017· dissertation· en· W2899104725 on OpenAlexaff
Elizabeth Koch

Bibliographic record

VenueTSpace (University of Toronto) · 2017
Typedissertation
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicCancer, Hypoxia, and Metabolism
Canadian institutionsUniversity of Toronto
Fundersnot available
KeywordsEpigeneticsDicerHypoxia (environmental)PhenotypeEpigenetic therapymicroRNAStem cellBiologyCancer researchMedicineBioinformaticsCell biologyGeneticsDNA methylationRNA interferenceGene expressionChemistryRNAGene
DOInot available

Abstract

fetched live from OpenAlex

Hypoxia is a common characteristic of solid tumors, associated with aggressive disease and poor prognosis in multiple sites, including breast and cervix cancer. These properties are attributed to the influence of hypoxia on treatment resistance to both radiotherapy and chemotherapy as well as biological responses that promote altered tumor biology. Extensive research has led to a good understanding of the mechanisms of cellular adaptation to hypoxia, and regulation of metabolic and angiogenic phenotypes. However, considerably less is known regarding mechanisms responsible for the influence of hypoxia on metastasis and stemness. In a search to identify novel genes that contribute to the cellular response during hypoxia, we discovered that hypoxia represses DICER, a key enzyme required for generation of mature miRNA. DICER is a known haplo-insufficient tumor suppressor that can stimulate cancer development through a reduction in miRNA generation. We demonstrate that tumor hypoxia is a major regulator of DICER expression in large cohorts of breast cancer patients and that DICER expression is suppressed by hypoxia to levels similar to that in tumors with monoallelic DICER loss. We also demonstrate that DICER repression occurs through a novel epigenetic mechanism requiring inhibition of the oxygen-dependent H3K27me3 demethylases KDM6A/B. Hypoxic suppression of DICER creates a miRNA processing defect and results in selective reduction of mature levels of the miR-200 family. Consequently, hypoxia leads to derepression of the miR-200 target ZEB1, stimulates the epithelial to mesenchymal transition and results in acquisition of stem cell phenotypes in human mammary epithelial cells. Finally, we demonstrate the importance of reduced DICER in mediating therapeutic response to fractionated radiation treatment in vivo. Our work suggests that in breast cancer the acquisition of EMT and stem cell properties, through epigenetic repression of DICER and loss of miR-200, may drive the known association of hypoxia and poor clinical outcome.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.001
Threshold uncertainty score0.002

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.014
GPT teacher head0.241
Teacher spread0.227 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2017
Admission routes1
Has abstractyes

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