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Record W2899619720 · doi:10.1093/neuonc/noy148.1076

TMIC-17. IMMUNE MICROENVIRONMENT OF NF2-ALTERED RADIATION-INDUCED MENINGIOMAS

2018· article· en· W2899619720 on OpenAlexaff
Suganth Suppiah, Shirin Karimi, Yasin Mamatjan, Farshad Nassiri, Kenneth Aldape, Gelareh Zadeh

Bibliographic record

VenueNeuro-Oncology · 2018
Typearticle
Languageen
FieldMedicine
TopicMeningioma and schwannoma management
Canadian institutionsUniversity of TorontoToronto Western HospitalPrincess Margaret Cancer CentreUniversity Health Network
Fundersnot available
KeywordsImmunohistochemistryImmune systemTumor microenvironmentRadiation therapyCancer researchPathologyMedicineExome sequencingBiologyGenePhenotypeInternal medicineImmunologyGenetics

Abstract

fetched live from OpenAlex

Radiation-induced meningiomas (RIMS) are more clinically aggressive than their sporadic counterparts, with higher rates of tumor recurrence, multiplicity and neurological impairment. Our laboratory has previously demonstrated that RIMs have a distinct genomic profile with a subset of tumors harboring NF2 inactivation through genomic rearrangements. In this study we establish the clinical characteristics and immune microenvironment between RIMs with and without the NF2 alterations. A retrospective chart review was performed on 31 RIMs. Volumetric analysis was performed using ITK-SNAP on serial preoperative imaging to estimate tumor growth rate. Immunohistochemistry staining for PD-1, PD-L1, CD-3, CD-163, and FOX-P3 were performed. Results were correlated with whole exome sequencing and RNA sequencing data previously published. Pathway analysis was performed using Gene Set Enrichment Analysis (GSEA) on RNA sequencing data using the differentially expressed genes. Clinically, NF2-altered tumors and NF2-WT (wildtype) tumors did not differ based on age at diagnosis, indication for previous radiation, WHO grade, histopathological subtype, extent of resection and tumor location. NF2-altered tumors had a significantly faster growth rate compared to NF2-WT tumors (3.8X faster, p>0.05). The difference in growth rate was independent of tumor grade. PD-L1 staining was negative on tumor cells in NF2-altered tumors and patchy positivity in 60% of NF2-WT tumors (p < 0.05). In contrast, 100% and 60% of tumors had PD-L1 positive immune cells in NF2-altered and NF2-WT tumors, respectively (p<0.05). The degree of CD3+ lymphocyte infiltration was lower in NF2-altered tumors (t=2.73, p<0.05). Our findings suggest that there is a difference in the immune microenvironment between NF2-altered and NF2-WT RIMs. NF2-altered tumors have a lower degree of CD3+ lymphocyte infiltration and higher frequency of PD-L1 positive immune cells that are indicative of an immunosuppressed microenvironment. Further work is needed to elucidate pathways that may be targeted to manipulate the immune microenvironment.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.002
Threshold uncertainty score0.005

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0020.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.027
GPT teacher head0.294
Teacher spread0.267 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations1
Published2018
Admission routes1
Has abstractyes

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