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Record W2901094345

The biosynthesis and signalling of cytokinins during the formation of tumors in the corn smut disease

2018· article· en· W2901094345 on OpenAlexaff
Ibraheem Alimi

Bibliographic record

Venuenot available
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicFungal and yeast genetics research
Canadian institutionsTrent University
Fundersnot available
KeywordsCytokininBiologyFungusCell divisionUstilagoBiosynthesisCell biologyGeneBotanyBiochemistryCellAuxin
DOInot available

Abstract

fetched live from OpenAlex

Tumor formation is a characteristic symptom of corn smut disease caused by the fungus Ustilago maydis. During the development of tumors, cytokinin levels are elevated. Cytokinins are plant hormones that stimulate cell growth and cell division. Although the level of cytokinins is increased, the biosynthetic origins of these cytokinins have not been determined. Are they produced by the corn or the fungus? Both can produce cytokinins when grown independently. In addition, it is unknown as to whether the increased production of cytokinins contribute towards the formation of tumors. To investigate these phenomena, several genes and proteins potentially involved in the biosynthesis and signalling of cytokinins were identified in both organisms. The plant proteins responsible for the biosynthesis and signalling of cytokinins are different from the fungal proteins and this allowed us to determine the changes in protein transcript levels over the course of pathogenesis by using reverse transcription PCR. The results indicate that the increase in cytokinins originate from both the corn and the fungus proteins. In addition, increased cytokinin signalling was also observed during the formation of tumors. This led to a model of the interaction in which the fungus secretes active cytokinins into the corn host. The increased production of active cytokinins leads to increased cytokinin signalling which promotes excessive cell division and the formation of tumors. The enhanced insight into how U. maydis induces the formation of tumors will aid in developing molecular approaches to inhibit tumour formation and mitigate the negative impacts of fungal diseases.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.002
Threshold uncertainty score0.005

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.011
GPT teacher head0.249
Teacher spread0.238 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2018
Admission routes1
Has abstractyes

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