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Record W2902528700 · doi:10.1093/ofid/ofy210.372

361. Changing Epidemiology of <i>Blastomyces dermatitidis</i> Infection in Quebec, Canada: A Retrospective Multicenter Study

2018· article· en· W2902528700 on OpenAlexaffabout
Kevin W. Dufour, Andrée Ann Pelletier, Mélina Denis, Nicolas Gagnon, Philippe J. Dufresne, Claire Nour Abou Chakra, Alex Carignan

Bibliographic record

VenueOpen Forum Infectious Diseases · 2018
Typearticle
Languageen
FieldMedicine
TopicFungal Infections and Studies
Canadian institutionsInstitut National de Santé Publique du QuébecCentre Hospitalier Universitaire de SherbrookeUniversité de Sherbrooke
Fundersnot available
KeywordsMedicineBlastomycosisInterquartile rangeRetrospective cohort studyEpidemiologyInternal medicineBlastomyces dermatitidisTransplantationImmunosuppressionIncidence (geometry)Mortality ratePediatricsImmunology

Abstract

fetched live from OpenAlex

In the wake of the increased incidence of blastomycosis in Quebec province, Canada, clinicians have observed a possible increase of severity in patients, with occasional death. This study aimed to assess temporal changes in blastomycosis severity and mortality in Quebec, and to identify risk factors for mortality of blastomycosis. A retrospective multicenter cohort study of patients with confirmed blastomycosis identified in a database at the provincial laboratory (Laboratoire de santé public du Québec) between 1988 and 2016. Severe cases were defined as patients with septic shock and/or acute respiratory distress syndrome and/or requiring mechanical ventilation. Immunosuppression included corticosteroid use, HIV, immunosuppressive therapy for inflammatory disease, chemotherapy, and transplantation. The primary outcome was 90-day all-cause mortality. Risk factors for mortality were identified by multivariate logistic regression. Over the study period, 220 blastomycosis cases were identified. Medical charts for 176 patients from 17 institutions were available and complete for data collection. The median age of patients was 55.3 years (interquartile range 45–67). Infection led to hospitalization of 119 patients (68%). Pulmonary involvement was recorded for 81% of cases (142/176) and two organs or more were involved in 35% (61/176). An increase in severity was observed mainly in recent years [1988–1997: 1/32 (3%); 1998–2007: 9/54 (17%); 2008–2016: 19/89 (21%); P = 0.05]. The overall mortality was 17.6% (31/176); 6% (2/33) in 1988–1997, 20% (n = 11/54) in 1998–2007 and 20% in 2008- 2016 (n = 18/89) (P = 0.15). There was also a significant increase in age at diagnosis (P = 0.005), the proportion of diabetic patients (P = 0.03) and the proportion of immunocompromised patients (P = 0.009) over time. The independent risk factors of mortality were age (aOR 1.03 for each additional year, 95% CI 1.0–1.06, P = 0.05) and immunosuppression (aOR 3.62, 95% CI 1.54–8.49, P = 0.003). The severity of blastomycosis observed in Quebec over the past 30 years has increased. These changes could be explained in part by an increase in the number of immunosuppressed patients. However, mortality has remained stable in recent years. All authors: No reported disclosures.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.001
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.020
Threshold uncertainty score0.112

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0010.001
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.001
Bibliometrics0.0010.003
Science and technology studies0.0020.001
Scholarly communication0.0010.000
Open science0.0010.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0020.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.017
GPT teacher head0.307
Teacher spread0.290 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2018
Admission routes2
Has abstractyes

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