The complete male-type mitochondrial genomes of the Fatmucket, <i>Lampsilis siliquoidea</i>, and the endangered Arkansas Fatmucket, <i>Lampsilis powellii</i>
Bibliographic record
Abstract
Doubly uniparental inheritance (DUI) is a unique mode of mitochondrial (mt) inheritance found only in some bivalve molluscs. Under DUI, both maternal (i.e. female-transmitted or F-type) and paternal (i.e. male-transmitted or M-type) mitochondrial genomes are transmitted. In addition to typical mt genes, these F- and M-type genomes each contain a distinct novel open reading frame, termed the f- and m-orf, respectively. Herein, the M-type mitochondrial genomes of Lampsilis siliquoidea and Lampsilis powellii (two putative unionid species within Unionidae) are presented. Relatively few M-type mitochondrial genomes have been sequenced. Consequently, these results are valuable for the on-going study of patterns of molecular evolution of DUI genomes. Both a phylogenetic analysis and an in silico analysis of the novel ORFs were conducted. Consistent with previous studies of unionoid M-type genomes, our results demonstrate the presence of a putative transmembrane domain in these M-ORFs with properties similar to those of M-ORFs of closely related species.
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How this classification was reachedexpand
Full frame machine prediction
Teacher imitationNot calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.
Distilled classifier scores by category (both heads)
| Category | Codex | Gemma |
|---|---|---|
| Metaresearch | 0.000 | 0.000 |
| Meta-epidemiology (narrow) | 0.000 | 0.000 |
| Meta-epidemiology (broad) | 0.000 | 0.000 |
| Bibliometrics | 0.001 | 0.001 |
| Science and technology studies | 0.000 | 0.000 |
| Scholarly communication | 0.000 | 0.000 |
| Open science | 0.000 | 0.000 |
| Research integrity | 0.000 | 0.000 |
| Insufficient payload (model declined to judge) | 0.002 | 0.000 |
Machine scores (provisional)
The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.
Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.
score_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from itClassification
machine, unvalidatedMachine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.
How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".