The complete male-type mitochondrial genomes of the Fatmucket, <i>Lampsilis siliquoidea</i>, and the endangered Arkansas Fatmucket, <i>Lampsilis powellii</i>
Bibliographic record
Abstract
Doubly uniparental inheritance (DUI) is a unique mode of mitochondrial (mt) inheritance found only in some bivalve molluscs. Under DUI, both maternal (i.e. female-transmitted or F-type) and paternal (i.e. male-transmitted or M-type) mitochondrial genomes are transmitted. In addition to typical mt genes, these F- and M-type genomes each contain a distinct novel open reading frame, termed the f- and m-orf, respectively. Herein, the M-type mitochondrial genomes of Lampsilis siliquoidea and Lampsilis powellii (two putative unionid species within Unionidae) are presented. Relatively few M-type mitochondrial genomes have been sequenced. Consequently, these results are valuable for the on-going study of patterns of molecular evolution of DUI genomes. Both a phylogenetic analysis and an in silico analysis of the novel ORFs were conducted. Consistent with previous studies of unionoid M-type genomes, our results demonstrate the presence of a putative transmembrane domain in these M-ORFs with properties similar to those of M-ORFs of closely related species.
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How this classification was reachedexpand
Full frame distilled prediction
Teacher imitationNot calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.
Codex and Gemma teacher scores by category
| Category | Codex | Gemma |
|---|---|---|
| Metaresearch | 0.001 | 0.000 |
| Meta-epidemiology (narrow) | 0.001 | 0.000 |
| Meta-epidemiology (broad) | 0.001 | 0.000 |
| Bibliometrics | 0.000 | 0.001 |
| Science and technology studies | 0.002 | 0.007 |
| Scholarly communication | 0.000 | 0.000 |
| Open science | 0.001 | 0.001 |
| Research integrity | 0.000 | 0.001 |
| Insufficient payload (model declined to judge) | 0.004 | 0.001 |
Machine scores (provisional)
The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.
Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.
score_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from itClassification
machine, unvalidatedMachine predicted; both teacher heads agree on what is shown here.
How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".