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Record W2904220355 · doi:10.1093/jas/sky404.906

PSX-15 Screening recombinant fibrolytic enzymes for improved ruminal fiber degradability of barley straw.

2018· article· en· W2904220355 on OpenAlexaff
Gabriel O Ribeiro, Ajay Badhan, Jiangli Huang, K. A. Beauchemin, Wude Yang, Yong‐Hui Wang, Adrian Tsang, Tim A. McAllister

Bibliographic record

VenueJournal of Animal Science · 2018
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicEnzyme Production and Characterization
Canadian institutionsConcordia UniversityAgriculture and Agri-Food Canada
Fundersnot available
KeywordsRumenXylanaseStrawFibrobacter succinogenesEnzymeBiologyDry matterCellulaseXyloseFood scienceRecombinant DNABiochemistryChemistryFermentationAnimal scienceAgronomyGene

Abstract

fetched live from OpenAlex

The objective of this study was to screen new recombinant fibrolytic enzymes for their ability to increase ruminal fiber degradability of barley straw using a series of rumen in vitro techniques [high-throughput in vitro micro assay, in vitro batch cultures, and Rumen Simulation Technique (RUSITEC)]. Eleven different recombinant enzymes in combination with a mixture of rumen enzymes were compared with rumen enzymes alone in a micro assay. Based on 20% greater glucose + xylose release than rumen enzymes alone; one endoglucanase [EGL7A, from Glycoside Hydrolase family (GH) 7], two xylanases (XYL10A and XYL10C, from GH10), and a recombinant enzyme mixture were selected for further assessment. In batch cultures, enzymes were applied at two dosages (100 and 500 &mu;g of protein per g of barley straw DM). Rumen in vitro batch cultures were conducted as a completely randomized design with three runs. All enzymes increased (P < 0.05) dry matter (DM) disappearance and total volatile fatty acid (VFA) production in batch cultures, but the mixture of recombinant enzymes was not superior to the use of a single recombinant enzyme. Three enzymes (EGL7A_THITE, XYL10A and XYL10C) were selected and applied to barley straw at 500 &mu;g protein per g for further assessment in RUSITEC fed a (300:700 g/kg DM) concentrate:barley straw diet. A completely randomized block design was used with 4 treatments (3 enzyme treatments and a control) assigned to sixteen vessels (4/treatment) in two RUSITEC systems. XYL10A increased (P < 0.05) barley straw DM disappearance (2.6%), while EGL7A and XYL10C had no effect. Enzymes selected based on the high throughput in vitro micro assay consistently increased barley straw degradation in ruminal batch cultures, but not in the semi-continuous culture RUSITEC system. Further in vivo studies are needed to evaluate the effect of XYL10A in ruminants fed a straw-based diet. Key Words:

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.024
Threshold uncertainty score0.232

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.017
GPT teacher head0.288
Teacher spread0.271 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2018
Admission routes1
Has abstractyes

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