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Record W2905446542 · doi:10.1093/jas/sky404.044

231 Urinary metabotyping around parturition indicates consistent metabolite signatures that can be used for monitoring and diagnosing of subclinical mastitis in dairy cows.

2018· article· en· W2905446542 on OpenAlexaff
Burim N. Ametaj, Guanshi Zhang, Elda Dervishi, David S. Wishart

Bibliographic record

VenueJournal of Animal Science · 2018
Typearticle
Languageen
FieldAgricultural and Biological Sciences
TopicReproductive Physiology in Livestock
Canadian institutionsUniversity of Alberta
Fundersnot available
KeywordsSubclinical infectionUrineMedicineMetaboliteIce calvingUrinary systemMastitisAnimal scienceInternal medicineLactationPregnancyPhysiologyBiologyPathology

Abstract

fetched live from OpenAlex

The objective of this study was to identify urinary metabolite signatures that can be used for monitoring and diagnosing of subclinical mastitis in Holstein dairy cows. Six multiparous pregnant Holstein cows with subclinical mastitis (SCM) and 20 healthy controls (CON) were selected out of 100 cows in the study. DI/LC-MS/MS-based urinary analyses were conducted on samples collected at -8, -4, SCM diagnosis, and at +4 and +8 wks around the expected day of calving. Data indicated that 14 amino acids and derivatives were found in the urine with Gln and SDMA consistently increased (P<0.005) in the urine of SCM cows. Out of 39 acylcarnitines (ACs) quantified C12:DC, C14, and C18:2, were higher (P<0.05) in SCM at all time points (P<0.05). Seventeen ACs at -8 wks, 10 at -4 wks, 23 at disease wk, 8 at +4 wks, and 12 at +8 wks were higher (P<0.05) in the urine of SCM cows. Most of the alterations regarding lysophosphatidylcholines (LPCs) were found at -8 and -4 wks prepartum with 6 and 4 LPCs species lowered at -8 and -4 wks, respectively (P<0.05). Multiple sphingomyelin (SM) species prior to calving (3 at -8 wks and 8 at -4 wks) and 2 at disease week were lowered in SCM cows (P<0.05). A total of 74 phosphatidylcholines (PCs) were measured in the urine. A total of 12, 12, 10, 9, and 9 species of PC aa and 7, 15, 15, 3, and 3 species of PC ae were altered during weeks -8, -4, Disease wk, +4, + 8 wks around calving. Overall, multiple metabolite species related to amino acids, ACs, LPCs, and PCs metabolism were identified as altered in the urine of periparturient dairy cows. Some of the most important metabolites might be used as biomarkers to screen cows for SCM.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.001
Threshold uncertainty score0.002

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.075
GPT teacher head0.321
Teacher spread0.245 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations7
Published2018
Admission routes1
Has abstractyes

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